Pseudomonas putida YKD221, TR32_RS12625

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCTGAAAGAGACCCTTGGGCATCGCTTGCAGTCAATGTTCCTAGACGTTGCCGAACTGGCACCGATGCTCAACCCAGACACGGTACTGCGCGAGGCCG GGCTGGATGACTGGGTGGCACGGTTTGGCTTGCAGGTTGAAGAACGCCATCATGCCAGTGCCGATGCCCAGGTGACTGCAGAACTGGCGCTGATCCTGTT CAGCCAGGCCCGGCGCCAGCAGCTGGACAGCCCGCTGCAGCTTGAGCAACGGTTGCGCGGGTGGCGACGGCGCAAGATGCAGAGTCATGGTTTGTAAGGC GTGGGATTTGCAGCGCCGGTGAGATTGAGCGCCGCCCGCGCGGCGTATCGCGAGCAAGCTTGATCTCACCGGCGCCACATAACTCAAACCAAGCCCCATG ATGGCAATCCGATAAGCGTCCATTGCACCCACCCCCTCCCCTCTGCAACAATCGAGAATAATTATCGTTAGTTAATGCATTCGTTCCAGGGGGACGCTGC
DNA Sequence for Gene
>TR32_RS12625
TTGTCTTCTGCACAAAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCTGCAACGCAGCATGGCCTGCC GCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAACTGGAGACACCCCGCGAACCCCGCGCGTTTCTGGCCGCCGT GGCCAAGGGGCTGATGTTCGACCACTTCCGTCGCACCGCGCTGGAACAAGCCTACCTGGCCGAGCTGGCATTGATCCCTGAAGCCGAACAGCCGTCGCCA GAAATGCAGCACCTGATCCTTGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCTCGCGCGGCGTTTCTGCACAGCCGCCTGG ACGGCATGGGCCATGCCGAGATTGCCGAGCGCCTTGGCGTTTCGGTGTCGCGGGTGCGCCAGTACATCGCCCAAGGGATGCGCCAGTGCTATGTAGCCCT GTATGGGGAGCCGACGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAACGTCCCGGTTTCGTCCCGGGTCCTGGAAGCCGCGATTGCCTGGAAACTCAGCCTCGGCGACAGCAGCAGCACGCCTGATGAGCGCAATGAATTCAT GCGCTGGCATGCCGCCAGCGAAGAGCACGCACGTGCCTGGCGCCAGCTCGGCGCCATGGACCAACGCGTTAGCGCGGCGGCTGGCCCGGCACGCCAGGCG CTGCTGCAATCACGCGCCAGCCTGCGGCGACGCATTGGCAAGGTTGGCGGCGGGCTGGCTGGCACGTTTCTGCTCGGCGCGCTGCTGGCATGGGGCGGCG CCCCGTCGCTGGCACCCAGCTACTGGCTGGCTGACCAGCGCACCGCCACGGGAGAGTTGCGTACCTTGCGCCTGGAAGACGGCACACTGCTGAGCCTGAA CACCCACACCGCCGTAGACATCGACTACGCCGGCGCGCAACGGGTGATCGTGCTGCACCAAGGCGAAATCTCGGTCGAAACCGGCCACCAGGACTCGCGC
Amino Acid Sequence
>RNA polymerase sigma factor
MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLETPREPRAFLAAVAKGLMFDHFRRTALEQAYLAELALIPEAEQPSP EMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEPT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site