Pseudomonas putida YKD221, TR32_RS13360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGACCGCTGCTGTCGCCAAGGAAGAGACGTTCGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAAGTCATCGCCATGTCCAACGACACCG AGTTCGGCTTGGCCTCGTACTTCTACGCCCGTGACATGAGCCGTGTGTTCCGTGTCGCCGAAGCCCTGGAGTACGGCATGGTGGGTATCAACACCGGCCT TATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATAC CTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATTGCAGTACCTGGTG GCCAGGGCGTTCACGACAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCGCCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCATT
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| DNA Sequence for Gene |
>TR32_RS13360
ATGAGCAAAACCAACGAATCCTTGATGCAACGTCGTGTAGCTGCCGTCCCACGTGGCGTCGGCCAGATCCACCCGATCTTCGTCGACACCGCGAAGAACT CGACCGTGATCGACGTTGAAGGCCGCGAACTGATCGACTTCGCCGGCGGCATCGCAGTACTGAACACCGGCCACCTGCACCCGAAAGTGGTTGCAGCCGT GCAAGAGCAGCTGACCAAGGTCAGCCACACCTGCTTCCAGGTGCTGGCTTACGAGCCCTACGTAGAGCTGTGCGAAAAGATCAACAAGCTGGTCCCAGGC GACTTCGACAAGAAGACCCTGCTGGTCACCACCGGCTCCGAAGCCGTTGAAAACGCCGTCAAGATCGCCCGTGCTGCCACTGGCCGCGCTGGCGTCATCG CCTTCACCGGCGGTTATCACGGCCGTACCATGATGACCCTGGGCCTGACCGGCAAGGTCGTGCCGTACTCCGCTGGCATGGGCCTGATGCCAGGCGGCAT CTTCCGCGCCCTGTTCCCGAGCGAACTGCACGGTATCAGCGTTGACGACGCCATCGCCTCGGTCGAGCGCATCTTCAAGAACGACGCCGAGCCGCGCGAC ATCGCCGCGATCATCCTCGAGCCAGTACAAGGCGAAGGCGGCTTCCTGCCAGCGCCGAAAGAGCTGATGAAACGCCTGCGCGCCCTGTGCGACCAGCACG GCATCCTGCTGATCGCCGACGAAGTACAAACTGGCGCTGGCCGTACCGGCACCTTCTTCGCCATGGAACAGATGGGCGTTGCGCCTGACCTGACCACCTT CGCCAAATCCATCGCTGGCGGCTTCCCGCTGGCCGGTGTGTGCGGCAAGGCCGAATACATGGACGCCATCGCGCCTGGCGGCCTGGGCGGTACCTACGCG GGTTCGCCGATCGCTTGCGCCGCAGCCCTGGCCGTGATCGAAGTGTTCGAAGAAGAAAAACTGCTGGACCGCAGCAAGGCTGTGGGTGAGCGCCTGACCG CCGGCCTGCGCGAAATCCAGAAGAAGTACCCGATCATCGGCGACGTCCGTGGTCTGGGCTCGATGATTGCCGTCGAAGTCTTCGAGAAAGGCACTCACAC CCCGAACGCAGCTGCTGTTGGCCAGGTTGTCGCCAAGGCTCGTGAAAAGGGTCTGATCCTGCTGTCTTGCGGCACCTACGGCAACGTCCTGCGTATCCTG GTTCCGCTGACCGCCGAAGACGCGCTGCTGGACAAAGGCCTGGCCATCATCGAAGAGTGCTTCGCTGAAATCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGTGACGCGCTTCAGAAAAAACCCGCCTCGGCGGGTTTTTTTATGCCCAGATAAGCCATGTGGCGCTATGGTTATCGGAGGATTGGCTTTGGAAGCTGCG ACGGACTGTGTGTCAGGGTATTCAGGAGTAGTTGGTGATGAGCGCTGCAGCCCCCACCCCACCAAGCGTACTGATTGTAGAAGGCGATCCTTGGGTACGG GACATGCTCAGCGAGATGCTGCTCAGCGTGCGCTGTGACGCCCGCCTGCAGGTATGCGCTGACGGCGCGCAGGCGCTCAGTGCCCTGTCCAGCAAGCCGG ACCTGATCATCGCTGCCCGCGAGCTGGCCGGTGTCGACGGCCTCGACCTGCTGCGCAAGGTGCGCGCCAAAGGGCCAGGGGTGCCGTTCATTCTCATGAG TAACCGCAATGACAGCGCCAGTGTGCGCGAAGCGCTGCCCCTGCACCCCACGGCTTACCTGAGCAAGCCACTGAACCTGGATAACCTGCGCAAGCGCCTG
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| Amino Acid Sequence |
>5-aminovalerate aminotransferase DavT
MSKTNESLMQRRVAAVPRGVGQIHPIFVDTAKNSTVIDVEGRELIDFAGGIAVLNTGHLHPKVVAAVQEQLTKVSHTCFQVLAYEPYVELCEKINKLVPG DFDKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGGYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALFPSELHGISVDDAIASVERIFKNDAEPRD IAAIILEPVQGEGGFLPAPKELMKRLRALCDQHGILLIADEVQTGAGRTGTFFAMEQMGVAPDLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVIEVFEEEKLLDRSKAVGERLTAGLREIQKKYPIIGDVRGLGSMIAVEVFEKGTHTPNAAAVGQVVAKAREKGLILLSCGTYGNVLRIL VPLTAEDALLDKGLAIIEECFAEIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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