Pseudomonas putida YKD221, TR32_RS15200
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCACCTTCGGTTCCGGCTGGGGCTGGCTGGTGAAGAAAGCTGACGGTTCCCTGGCCCTGGCCAGCACCATCGGCGCCGGCTGCCCACTGACCAGCGG CGACACCCCGCTGCTGACCTGCGACGTCTGGGAACACGCCTACTACATCGACTACCGCAACCTGCGTCCGAAGTACGTCGAGGCGTTCTGGAACCTGGTC AACTGGGCCTTCGTTGCCGAGCAGTTCGAAGGCAAGACCTTCAAGGCCTGAGTCATTCGGCCTTGAACGAGAAACCCGGCCATGTGCCGGGTTTTTTTGT GCCTGTGTTGCCGCAAACAGGCTGGCACGGTTTTGCTTGCTCAGGCCGCATACCACGCTAACATCAAACGTCTGGAAGATTGATACAGCGCATTCAAGTT GCGGGGTCAGGCAACCGATACACTGCTCATGATCGGCCGGTAGTGTATCGTCATCGTTGATGGCAAAATGATGCCATGCGCATGGATTAAGGAAACCCCA
|
|
| DNA Sequence for Gene |
>TR32_RS15200
TTGAAGCTGGAATTGCGGAACAGCTTGTCGGTCAAGTTGCTCAGGGTCGTGCTGCTGTCGGCGTTGGCGGTTGGCGTCGTGCTCAGCTGTGCGCAAATCG TCTATGACACCTACAAGACCCGCCAGGCCGTGGACAACGATGCCCAGCGCATCCTCGACATGTTCCGCGATCCCTCGACCCAGGCGGTTTACAGCCTCGA CCGTGAAATGGGCATGCAGGTCATGGAAGGCCTGTTCCAGGACGAATCAGTGCGCATGGCCTCCATTGGCCACCCCAACGAAACCATGCTGGCAGAAAAG TCCCGCCCGCTGCAGGACATGTCCATGCGCTGGCTCACCGACCTCATCCTCGGCCAGGAGCGCACCTACACCACGCAACTGGTCGGCCGTGGCCCTTACA GCGAATACTACGGCGATCTCAGCATTACCCTCGATACCTCCTCCTACGGCAAAGATTTCCTGATCAACGCGGTGATCATCTTCATATCCGGCGTGCTGCG GGCCATGGCCATGGGCCTGGTGCTTTACCTGGTCTACCACTGGCTGCTGACCAAACCGCTGTCGAAGATCATCGAGCACCTCACCCAGATCAACCCTGAC CGCCCCAGCCAGCACCAGATACCGCTGCTCAAGGGCCACGAGAAAAACGAACTGGGCCTGTGGGTGAACACCGCCAACCAGTTGCTGGCCTCGATCGAGC GCAACACCCATCTGCGCCACGAGGCGGAAAACAGCCTGCAGCGCATGGCCCAGTACGACTTCCTCACCGGCCTGCCCAACCGCCAGCAACTGCAGCAGCA ACTGGACAAGATCCTCGTCGACGGCGGCCGTCTGCAGCACCGTGTGGCAGTGCTGTGCGTTGGCCTGGACGACTTCAAGGGTATCAACGAACAGTTCAGC TACCAGGTCGGTGACCAGTTGCTGCTGGCCCTGGCCGATCGACTACGCGCCCACAGCGGCCGCTTGGGCGCTCTGGCGCGGCTGGGCGGCGACCAGTTCG CCCTGGTACAGGCCAATATCGAGCAGCCCTACGAGGCTGCCGAACTGGCGCAAAGCATCCTTGATGACCTGGAAGTACCGTTCGACCTCGACCACGAGCA AATCCGCCTGCGTGCGACCATCGGCATCACCCTGTTCCCCGAAGACGGTGATAGCACCGAAAAACTGCTGCAGAAAGCCGAACAGACCATGACCCTGGCC AAGGCCCGCTCGCGCAACCGCTACCAGTTCTATATCGCCAGCGTCGACAGCGAGATGCGTCGCCGTCGCGAACTGGAAAAGGACCTGCGTGAAGCCCTGC CCCGCAACCAGCTTTACCTGGTGTATCAGCCACAGATCAGCTACCGCGACCACCGGGTGGTTGGCGTAGAGGCCCTGCTGCGCTGGCAGCACCCGGAACT GGGCATGGTGCCACCCGACCAGTTCATCCCCCTGGCCGAGCAGAACGGCAGCATCATCAGCATCGGCGAATGGGTGCTTGACCAGGCCTGCCGGCAACTG CGCGAATGGCACGACCAAGGCTTCAGCGACCTGCGCATGGCGGTCAACCTGTCTACCGTGCAACTGCACCACAGCGAGCTGCCACGGGTGGTCAACAACC TGCTGCAAGCCTATCGCCTACCACCGCGCAGCCTGGAACTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCACCTGTTGAG CCTGCGCCGCTCCGGGGCGCTGATTGCCATCGACGACTTCGGCACCGGCTACTCGTCCCTCAGCTACCTGAAGTCGCTGCCCCTGGACAAGATCAAGATC GACAAGAGTTTCGTTCAGGACCTGCTCGACGATGATGACGACGCCACCATCGTTCGCGCCATCATCCAGCTGGGCAAGAGCCTGGGGATGCAGGTGATCG CCGAGGGCGTGGAAACGGCCGAGCAGGAAACCTACATCGTTGCCCAGGGTTGCCACGAGGGCCAGGGCTACCACTACAGCAAGCCTCTTTCGGCCCGTGA ACTGACCCACTTCCTCAAACAAGCGCAACGCAACCGGGTTTCGGTGTCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCCACCTGCCCGGTTACAGGCCGTGCCCCTGATTTACATGAATTGCGCGCCCGCCTCTTTACAGCAAATGCAAATCTTTCGCATGATGTTGTAGTTTTG CGTGCCACGGCGCACGGTCCACCCCTTTGGTCCAACCACACGATGCAGGAAAACCAATAATGATTCGAATGCCTCTGGCCTCCGCCAGTCTGCTGGCCAT TGCCATCGCCCTCGCCGGTTGCGGTGAAGGCAAGGACGAAAAAGCCGCCGCGCCGCAAGCCCAGGCACCTGCTGCCGCCACCACCGCTGTTGCGCCAGGG GCTGTCGACGAAGCCGCCGGCAAAGCCGTGGTCAAGCATTACACCGACATGGTCTACGCCGTGTACAGCGACTCGCTGAGCACTGCCAAGACGCTGCAGA CCGCAGTCGACGCGTTCCTGGCCAAGCCCAACGACGAAACCCTGAAAGCCGCCAAGGAAGCCTGGTTCGCCGCGCGCGTACCGTACCTGCAGAGCGAAAC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVDNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEK SRPLQDMSMRWLTDLILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGKDFLINAVIIFISGVLRAMAMGLVLYLVYHWLLTKPLSKIIEHLTQINPD RPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFS YQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQL REWHDQGFSDLRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTHFLKQAQRNRVSVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|