Pseudomonas putida YKD221, TR32_RS15850
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47413 | lambda repressor-like DNA-binding domains | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 10 | 73 | 5.91E-15 |
| Pfam | PF07883 | Cupin domain | IPR013096 | Cupin 2, conserved barrel | 114 | 183 | 4.5E-14 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | IPR011051 | RmlC-like cupin domain superfamily | 54 | 183 | 3.93E-23 |
| Pfam | PF01381 | Helix-turn-helix | IPR001387 | Cro/C1-type helix-turn-helix domain | 14 | 68 | 2.1E-10 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | IPR014710 | RmlC-like jelly roll fold | 92 | 184 | 6.8E-15 |
| Gene3D | G3DSA:1.10.260.40 | - | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 7 | 75 | 7.9E-15 |
| CDD | cd02209 | cupin_XRE_C | - | - | 99 | 184 | 6.03251E-16 |
| PANTHER | PTHR46797 | HTH-TYPE TRANSCRIPTIONAL REGULATOR | - | - | 11 | 182 | 9.0E-20 |
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 14 | 68 | 1.4408E-12 |
| SMART | SM00530 | mbf_short4 | IPR001387 | Cro/C1-type helix-turn-helix domain | 13 | 68 | 3.9E-11 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.