Pseudomonas putida YKD221, TR32_RS17720

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGTTCCTGGTGCTGGCCGCCCAGTATGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATCACCGGTGTGA TCGTCTCGGGTGGCGACAACAACATCTTCACCCAGATCGGCCTGATCGTACTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGACGAACAGGCCAAGGGCCTCGATCCGCTGGCTGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGATCGCCTTCATCATG GGGGTAGTGCCCCTGGTGTTCAGCTCCGGTGCTGGTTCGGAAATGCGCCATGCCATGGGTGTGGCGGTGTTCTCGGGGATGATCGGCGTGACCGTGTTCG GCCTGTTCCTGACCCCGGTGTTCTTCTTCCTGATCCGCCGTTTCGTCGAGCGTCGCCAGGCCCGCAAGGCTGAACACGCTCAAGTGCTGGAGAACCATGC
DNA Sequence for Gene
>TR32_RS17720
ATGAACCTGCTCAAACCCTTGACCCCAAGCTTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCTC AACTGGGCAGCGATGTGCAGGCCAAGGCCTACGACCGTAGTCGCTTCGAGAGCCTGTGGTGGAAGCAGTTCGACGACCCGGTGCTGAACCAGCTGGTGCA GGCTTCGCTGGACGGCAACCGTGACTTGCGCGTAGCTTTCGCCCGCCTGAAGTCGGCTCGCTCGATTCGCGAGGACGCCGAAAACGACCCGTTCCCGGTG GTCACCAGCCGTGCCAGCAGCGATCTCGGCAAAGGCCAGATCCCCGGCCAGACCACCGAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGG CCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTGGCCGCCGCCGACCTGCAACAGTTGCAGGTCAG CCTGATCGCCGAGCTGGTGGATGCTTATGGGCAGCTGCGTGGCGCGCAATTGCGCGAGAAAATCGCCCTGGCCAACCTCAAGACCCAGCAGGAATCGCGC ACCATCACCGAAACCCTGCGCGATGCCGGCGTGGGCAACGACCTCGACGTGGTGCGTGCCGATGCCCGCCTGGCCGGGGTCGAAGCCACCGTGCCGCAAC TGCAAGCCGAACAGGCACGGGCGCGGCATCGCATCGCCACCCTGCTCGGCCAGCGCCCTGACGCGCTCAGTGTAGACCTGTCGCCCAAGGCCCTGCCGGC CATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGTTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCCGCCACCGCCAAC GTTGGCGTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCA ACGCCTGGGCACTGGGCCCGAGCATTACCTGGGCGGCCTTCGACCTGGGCAGCGTGCGGGCCCGCCTGCGCGGCGCCAAGGCCGATGCCGAAGGGGCACT GGCCAACTACGAACAGCAGGTGCTGCTGGCACTGGAAGAGTCGGCCAACGCCTTCAGCGATTACGACAAGACCCAGCAGCGTCTGCTGTCGCTGATGCGC CAGAGCGACGCCAGCCGCAAGGCTGCAGAACTGGCCTCGATTCGCTATCGCGAGGGTACCGTGGACTATCTGGTACTGCTCGATGCCGAACGTGAGCGGC TAAGTGCTGAAGATGCACAAGCTCAGGGTGAAGTCGACCTTTATCGCGGCATCGTCTCGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGT GGCCAGCGCACACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCAC CCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGACTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGCTCTGCC CTTCCCGCCGCCACGGATCGTCCGATGCCCAGACGCAACCGCTACCTGATCGCCCTGCTGTTGTCGATTCTGGTATCGGCCCTGTTCGGCTACCTGTGGC ACGACGCCCCGCCAACCCCGCCGACCTTGCCAGCACACAGCTACGCCAAGGCGCTGCGCCAGGCCCACGACGGCCAGCCCGGTGCCGCACGGGTGCTGTA CCAGCAATTGCAACGAACCGACCTGCCTGCGATCCGCCGTGCGGCGCTGTACGCCGAGTTGCCCAACTACCCCTCGCCGCAGGCATTGAAACTGGCCCGC
Amino Acid Sequence
>RND transporter
MNLLKPLTPSLLALALAACAVGPDYQAPATEPAQLGSDVQAKAYDRSRFESLWWKQFDDPVLNQLVQASLDGNRDLRVAFARLKSARSIREDAENDPFPV VTSRASSDLGKGQIPGQTTERVNSERYDLGLDMAWELDLFGRIQRQIEASEAQEAVAAADLQQLQVSLIAELVDAYGQLRGAQLREKIALANLKTQQESR TITETLRDAGVGNDLDVVRADARLAGVEATVPQLQAEQARARHRIATLLGQRPDALSVDLSPKALPAIAKALPVGDPGELLRRRPDIRSAERQLAAATAN VGVATADLFPRVSLSGFLGFTAARGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGAKADAEGALANYEQQVLLALEESANAFSDYDKTQQRLLSLMR QSDASRKAAELASIRYREGTVDYLVLLDAERERLSAEDAQAQGEVDLYRGIVSIYKALGGGWQPETVASAH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site