Pseudomonas putida YKD221, TR32_RS18770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGCCCGTCCAGGATTCGGGCCAGGCAAAGATGGTCAGCGCCGCGCCAGACAACCGCCCTTGGGCAGCCTTGGCCAGGTCGAAGCGGCCCGGCCCGTCC TTGTCGGCTTCGCTGCCTTCGTTGCCGAAGTCCAGCGGCAAGGTGACATGGCTGTCGAACGAGATGATGCGTTCCTGCAAGTCGTTGGCTTGACGAACGA CTTCCCGGGCGTAGCCGCCAGGGGCCGCGAAATGGTACCAGGCAGCCAGACCGGCACCCGCGGCGACTGCCGCAGCCAGGCTGATGTACAGGGCTTTTTT CCAGCGTGGTGTCGTCATCTTGGTCTCGGTAGGTTCGCCGTCGAGGGAGGGCACAGAGGCCGTCGCTACCTGGGGTGAACGAGTCGACACGGAGGAAATT TAGCCGCCCCGGCCGCGGCGTTAAATTTCAGTGCAGGTACAACGTTCTAGCCTTGGACGGGCCGTGCTCCATGGCCGCAATGAAGGCGCAGGTAGTTGCA
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| DNA Sequence for Gene |
>TR32_RS18770
ATGACGATTTCTCGACGCGGGTTCATCGCTGCTGTGGCATTGACGGGCGTAGCGGTACCCGGAGCGCTGTATATGCAGCGCCAGCGGGATGCCGAGGCGT TTGCGGAAACGCCTGGCGAGGCTGTTGTCGAGTTGGCCGATACCCGCCTGCAGCAGCTGGGCGACACCCTGCGGGGCATCTGGCGCTGGACTGCACATGG CAAGGATGCCCAACTGCTGGGTTTGCCCGACGGGGAGCTGGAATTGTTTCTGGATGTCGCCAGCAATGGCCGGGGGCTGCGAGGTTACCTGGACACCGCC GAACGCCTGCGCAGTGAGCAGGAACCCCGTTATCGGGTCATGGGTGACTTGCTGACGGACAAGCCCGGGATGTTGCGCTGGCGGCTGTTTTCAACCGAGC CCGGTGCAGGGCAGGCGCGCTATGAATGCCATGTGGTGCTCGATGAGGTCTGGGGCGCCTATGGCAATGCCGGGCCGGCAACGCTCAATGGTCGTATCTC GGCCCTGGACCGCGCCCTGTCTCTGCCTGTTCTGGACAACGGCTTCCTGGCCTTGAAGCGGCCTTTCCCGGAGGCTCGCGAACGTACGCCGCTGTCGCCA CAGCTGCTGGCTTGGCTCATTTCGCCGGAGCATCGGCTGTTCCACCAGCTATGGCACGCATCGCGGGACAAGTGGCACAAGCTGGAAGAGGACAAGCAAT CCGCCCTGCGTGGCTTGGGCTGGCAACCCGGGCCGCGTGGCCAGGAGCGTGATGCGCGTGGCCGGCACAAGGATCGCAACGGTTCCGGAGAGGACTTCCT GTTCATGCACCGGCACATGCTTGGCAGTGCCAGGGCCCTGCAGGAACTGCCTTCGTGGACGCGGTTCCCGCTGCCTCAGCCGGAGCTCGAGCGTGACCGC ATCGGTTTCGCCCGTTACTTCGACAACCACGACGGCAATGCCTTGCCACCGACCTGGCTGGCCCATGACGACCAGGAGTACACCCAGTGGGTACGCGACA TCAAAAGCCCGGATACCTTCCACGGCAACTTTCAGGTCTGGGAGTCGCGCTACAGTGATCCGGAATACCTGAGCAAGCTGACCTTGGGGCAGTTCGGCTC AGAACTGGAGCTGGGCCTGCATGACTGGTTGCACATGCGTTGGGCGGCGGTGCCGCGCGACCCGTCCAACGGTATGCCGGTGCCTGCTGCACGTACCCCG GGTGATTTCGCTGAGCGCTGGTTCGAAGCACGCAACGATTTTCTCGGCGACCCGTTCTCGTCACATGTAAACCCGGTGTTCTGGCATTTTCATGGCTGGA TCGACGACCGAGTCGACGATTGGTTTCGAGCCCATGAGCGGGTCCACCCGGGTGAGATCCGCCGCTTGCAGGTGAACGGCGTGCCCTGGTTCGCACCCGG GCGTTGGGTGGCGGTGGCTGACCCGTGGCTGGGTCCCGATACCCATGGCTGTTCGACGGTGCCGGGCTTGCGGCCCGGTCGAAGCGTCGAAATGGACCCG GAAACCATGAAGCTGGCGTTGCGCATCATTTATGGCAACGAAGACCTCTTTGCCCGGCTGCAACCACGGGTGCCGCAGCGCCCCTGGTATGCCCGCAATC TCAAGGTTGTGCGGCCGTCGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGTGAGCACAGCGCAGGTGTACGTTGCTGAGAATCATTATATTTTGTAAGATCGCACGCTGATATCACTCAGTTCTGCATCTGCCCCAGCGTGGGTGTG CAGACGATTCCAGGTGTGTTTGTGGAACGTTACTATCGTGAGTTGGTGAGTTTCCTGTCCGCGCGCTTGGGTAACCGTCAGGCGGCAGAGGATGTTGCCC ACGATGCCTACCTGCGGGTACTGGAGCGAACGGACAACGGGCAGATCGAGCATCCGCGCGCATTCCTGTATCGTATCGCCCTGAACCTGGTGATCGACCG TCATCGTCGCCATCTGGTGCGTCAGGCCGAACCGCTTGAGATACTCGACAGTGATGAGGGCGGGCATGTGCCGGCGCTGTCGCAGGAACTGCAGCTCAAC CAACGCCTGGCCCTCATGCAGCGGGCGCTTGACGAACTGACCGGCCCCTGCCGCGAATGCTTCCTGCTGCGCAAGATCGAAGGCCTTTCACATCTGCAGA
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| Amino Acid Sequence |
>hypothetical protein
MTISRRGFIAAVALTGVAVPGALYMQRQRDAEAFAETPGEAVVELADTRLQQLGDTLRGIWRWTAHGKDAQLLGLPDGELELFLDVASNGRGLRGYLDTA ERLRSEQEPRYRVMGDLLTDKPGMLRWRLFSTEPGAGQARYECHVVLDEVWGAYGNAGPATLNGRISALDRALSLPVLDNGFLALKRPFPEARERTPLSP QLLAWLISPEHRLFHQLWHASRDKWHKLEEDKQSALRGLGWQPGPRGQERDARGRHKDRNGSGEDFLFMHRHMLGSARALQELPSWTRFPLPQPELERDR IGFARYFDNHDGNALPPTWLAHDDQEYTQWVRDIKSPDTFHGNFQVWESRYSDPEYLSKLTLGQFGSELELGLHDWLHMRWAAVPRDPSNGMPVPAARTP GDFAERWFEARNDFLGDPFSSHVNPVFWHFHGWIDDRVDDWFRAHERVHPGEIRRLQVNGVPWFAPGRWVAVADPWLGPDTHGCSTVPGLRPGRSVEMDP ETMKLALRIIYGNEDLFARLQPRVPQRPWYARNLKVVRPSG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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