Pseudomonas putida YKD221, TR32_RS18625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCCCCTTTCAACACCACCGCACTGGGCAGGTTGTAGGCGGCACCGTGTGGGTCCAGTTGCCACAGAAACCACATGCGCTGCTGGGCATAGGACAGTG CATGGCGATCGTCGACGGCGACGTCCGCAGGGATCGGGAATTGTGAAAAGTCGATACCCTCGCTGGCCAGGGTTTCGAGAAACAGCCGCCGCTTTTCCAC CGGCAGCTCAATGAAACGGCGGGCGAGCTTCAGGGACTTCTCAACATTCATCGGGTTTCATCCGTGCACATGGGTTTCGAGTAACAACTCGGCTATCCCT ACGAAACGGATGGAACACCGGGAAAATTAACCCGTCACGGCCACCGGCAAAGGCAGGCTCAGCGGGGGCCTGGGGGTTCGCCATGACAGACGGTTTTCCG GTTTGCCTGCCCTCGCGCGTCATAAGGGTACCGGCGGGATTTTCCTCATACCGCGAGGGATCGACGCGCAAGCCACCCAAACCACAAGGCACCGGCCCCT
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| DNA Sequence for Gene |
>TR32_RS18625
ATGTCCAAAAAGTCACGCTCGAAACTCTGGTTCCTGGTTCACAGCTGGCTGGCCCTGCCCATCTGGTTCTTCGTGCTGATCGTCTGCTTCACCGGCACCC TGGCAGTGGTCAGCCAGGAACTGGTGTGGCTGGCCAAACCGGAGATACGCGCGGCGAAGCCGAGCGATGATGCGCCACTGCTGACTTACGACCAGGTGCT CAAGGCCCTGCGTGAAGCCCGCCCCGATCTGGATGTGCAATACATCATGCGCCCGGACGAGTCGCACTTCGCGCTGCAGGTGCAGGTGGTGCAACCGGAC AACACCACCCAGAACCTCTACGTGAACCCCTATACAGGCAAGATCCAGGGCATCAGCCCTTCCTTCGACTTCCGCCAGTTCACTCGCGCCTTGCATGGCT GGTGGCTGGTACCTTTCGGCAACGGCTACCCGTGGGGGTGGTACCTGGTCTCGCTGCTGGGCTTGCCGATGCTTGCCTCGCTGGTCACCGGCCTGGTCGT CTACAAGCGCTTCTGGAAAGGCTTTCTGAAACCTACCCTGCGCTTTCGCCAAGGTGCGCGCATCTTCTGGGGTGACTTCCATCGCCTGAGCGGTATCTGG TCGATCTGGTTCATTGCCGTGATCGCGATCACCGGCACCTGGTTCCTGATCCAGGCGTTGCTGGCCGACAACCACATCTCGATCTCAAGCCGCGACGTCC CCGCCGTGGTGGCCCGCGAAGACGTACCGCTGCTGCAGGCTGGCGAAGCGCCCCGGCTGGTCAGCCTGGAGCATGCCATCGAAACGGTGAAGGCGCAGAT CCCCGGCTTCGAGGCATCCTTCGTGCGCCTGCCCGGCAATGCCTATGACACCTTCAACATCCGTGGCCGCGGCTGGTACCCGCTGATGTTCCAGAGCGCC AGCATCAACCCGTACACAGGCGTGGTCGCCACCTCGCACACCCTGGATGATCGCACGTCGCTGGAGTTCGTCACCGAATCCATGCGCCCGTTGCACACAG GCGACTTCGGCGGGCTGTGGGTCAAGATGATCTGGTTCGTTTTTGGCCTGGTGCTGACCTTGATGGTGCTCAGCGGCCTGTTGATCTGGAGCAAGCGCAC CGCACAGGCCACTGCAGCCGCACTGAAACGCAAGCCGCGCAGCGCACCAACGGCCAACGCCGCGCAAGACGCCCAACTGCCGGAGACCGCCCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGAGCCACCACCACCGACGCACCTTCGGCCTCACGCCGCCTGTGGCTGAAATGGCGCTTTCACCTGAACATCCTGCTGATACTCATCCCCTTGGGGTT CATGCCCCGGTATTTTGCCGACCAGGCGTTGTTCAAAGGTGAAGCCGGGCTGGGTGAGCGGGAGGCGGGTGTGGTCGCAGTGGGCCCATGGAGCCTGCGC CTGGCCGAATTCCGTGCGTCGGCGCCCCGCCAGGAAGGCCCGGCCGGGTATTTCAAGAGTTTCAGTGCGGCACTGTGCAACCACTGTATCGGCGAAGTGA AGGCCACCTACCTGCGGGTGGGTAAGCCACGCAGCCTGCGCGCGGCCGGGAGCATCTTCTTCGGTTCACCCTACAGCATGGGCGCTTCCGTCCCGGTTCC GGCCAAGACCCGACCCAACGCTGAATTGTGGATCACCATGGAAGGCTGGGATGGCAGCGTGCACCAGGCTTCGATTCCCCTCAGCCAGGCCTCGCCGGCG
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| Amino Acid Sequence |
>peptidase
MSKKSRSKLWFLVHSWLALPIWFFVLIVCFTGTLAVVSQELVWLAKPEIRAAKPSDDAPLLTYDQVLKALREARPDLDVQYIMRPDESHFALQVQVVQPD NTTQNLYVNPYTGKIQGISPSFDFRQFTRALHGWWLVPFGNGYPWGWYLVSLLGLPMLASLVTGLVVYKRFWKGFLKPTLRFRQGARIFWGDFHRLSGIW SIWFIAVIAITGTWFLIQALLADNHISISSRDVPAVVAREDVPLLQAGEAPRLVSLEHAIETVKAQIPGFEASFVRLPGNAYDTFNIRGRGWYPLMFQSA SINPYTGVVATSHTLDDRTSLEFVTESMRPLHTGDFGGLWVKMIWFVFGLVLTLMVLSGLLIWSKRTAQATAAALKRKPRSAPTANAAQDAQLPETAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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