Pseudomonas putida YKD221, TR32_RS19030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACGCAGTCAAGCCTGGCGTGTTCGATCTGGACGATATCGATCACTTCAGCACTCGCGCTGTGAGCTTCTTCCTCGGTTTGCCGGGCCCGCGTCATCCG AAGCAGGCTTTCGACGTGATGGTTGCCGCGGCACGCAAGCTGGCCCACGAACTGAACGGTGAGCTCAAGGATGACCAGCGCAGCGTGCTGACTGCCCAGA CCATCGAGCACTACCGCCAGCGTATCGTCGAGTTCGAGCGCCGCGCGCTGACCCAGAAACGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCT GGCCGGTTCGGGTGTCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGCATGTGACGCCCTTGTAGGA GCGGGTTTACCCGCGAAGAGGCCGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCCC
|
|
| DNA Sequence for Gene |
>TR32_RS19030
ATGACCGCCGAAACCCGTATCCTCGAACTGCGTGCCGAGCTCGATCAGCATAACTATCGCTACTACGTGCTCGACGAGCCCAGCGTGCCCGATGCCGAAT ACGACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGCGTTGGCGGCGCTGCCTTGGC TGCGTTCAGCCAGGTGCGCCACGAAGTGCCCATGCTCAGCCTGGGCAACGCCTTCGAAGAAGCCGATCTGCGTGAGTTCGGTCGCCGTGTGGTAGAAGGC CTCGATCAGCCGGGTGCGGTCGACTACAGCTGCGAACCCAAGCTCGATGGCCTGGCCGTGAGCCTGCTGTACCGCGACGGACAGCTGGTGCAGGGCGCCA CCCGGGGCGACGGCACCACTGGCGAAGACATCAGCGCCAACGTACGCACCGTGCGCAACATCCCGCTCAAGTTGCAGGGCAAGGGCTGGCCGGCAGTGCT GGAGGTGCGCGGCGAGGTGTACATGAGCAAGGCCGGTTTCGACCGGCTCAATGCCGCCCAGGCCGAGGCCGGTGGCAAGACCTTCGCCAACCCGCGCAAT GCCGCCGCTGGCAGCTTGCGCCAGCTGGACTCGAAAATCACCGCCAGCCGCCCGCTGGAGTTCTGCTGCTATGGCGTCGGCCAGTTGTCCGAAAGCATCG GCGACAGCCACATCGGCATCCTCGAGCAACTCAAGGCCTGGGGCCTGCCGATCAGCCGCGAGCTCAAGCATGCGGCGGGCATCGAAGAATGCCTGGCCTA CTACCGCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGTGTAGTGTTCAAGGTCAACAGCCTGGCTGCCCAGCGCGAGCTGGGCTTC CGCGCCCGAGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGACGTTGAGTTCCAGGTTGGCCGTACGGGAG CCGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAGGTGGCCGGTGTGACCGTGTCCAACGCCACCTTGCACAACATGGACGAAATCGCCCGCCTGGGCCT GCGCATCGGCGACACGGTGATCATTCGCAGGGCCGGCGACGTGATCCCGCAGGTGATGCAGGTGGTGCTGGAGCGTCGTCCGCAAGACGCCCGCCCGGTA GAGGTGCCAAGCGAGTGCCCGGTGTGTGGTTCGCAGGTCGAGCGTACCCAGCTGGTCAAACGCAGCAAAGGCAAGGAAACCACCAGCGAAGGTGCGGTGT ACCGCTGCGTCGGCCGCCTGGCCTGTGGCGCGCAGCTCAAGCAGGCGATCATTCATTATGTGTCGCGCCGTGCCATGGACATCGACGGCCTGGGTGAGAA GAGTGTCGAGCAGTTGGTGGATGAAGGCCTGATCGGCTCGCCGGCTGACCTGTACAAGCTGCAGTTCGAGCAGGTCGTCGGCCTTGAAGGCTTTGCCGAG GTGTCGACCCAGAAGCTGCTGGATGCCATCGAAGCCAGCAAGCGCCCGAGCCTGGCGCGCTTCATCTACGCGCTGGGCATCCCGGATGTCGGCGAGGAGA CTGCCAAGGTGCTGGCCCGCTCGCTGGGCAGCCTGGCGCGCGTGCAGCAGGCACTGCCGCAGGTGCTGACCTATTTGCCGGACATCGGTCTCGAAGTGGC CTACGAGATCCACAATTTCTTTGAAGACGAGCACAACCAGAAGGTTATCCAGCAGTTGCTCGACAGCGGTATGCAGTTGCAGGACGAAGGTGAGCTGGCT GCCGAATTTGCCGCCAGCACCACCTTGGCCGGGATGATCGCCAAGCTCGACATTGCCTCCGTCGGCCCGACCGGTGCCGAGAAGTTGGTGGCCAAGCTCG ACAGCCTGGACAAGATCATCGCCGCCGACGGCATTGACCTGCGCCAGGCCCTGGCGGCCAAGCAGGCCGACGCAGTGCGTGAGTTCTTCAAGGATGAAGC AAACCAGAAACTGGCCCGGGACATCGAAGCGCAGCTGCTGGCATTCGGCATGCACTGGAGCAGCGAGAAGAAGGTGGCCGAAGGCTTGCCGCTGGCCGGC CAGACCTGGGTGCTGACCGGTACGCTGGAGCGCATGAGTCGGGACATTGCCAAGGACAAGCTGGAAAGCCTGGGGGCCAAGGTTGCCGGTTCCGTTTCCG GCAAGACCCACTGCGTGGTGGCAGGGCCGGGGGCAGGTTCCAAGCTGGCCAAGGCTGCTGAGCTGGGTGTGAAGGTACTGGACGAAGATGCCTTCGTCAC ATTCCTGGCCGAACAGGGCATAGCGGTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATACGTGCCCCCTTGTGGGGGGCAACTGCCTTGCTCAAAACTCGAAAAGCCTGCGCGGTCCCCCGTAGGATCGGGTTTACCCGCGAAGAGGCCCGTCC AGGCCGTCTCGCCCCTGACAAGTCATTGAGAAATGATGACTTTTTCTGCCGCAGTGGTTGTATCTGCCCCAAAGACCGGTACAATGGCGCCACTCGCTGC TCAGCGAGGCATGTAGTGGTGGCCCCATCGGTCCCCCCGCATTGATTACCCGTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACATCGAG TGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTTCTGGGGTCGGAAAACCTCAATCTGTAACAAACGCCTTCGTTCTTTCCTGCTTTTCGCCCAATGCTC CCGCCGCCGACAGCTTCATCAGCCGTTGGAATTTCGGGCATGCCAGATGATCTTTCTCAGGGCATTGCGCCGCATGCCGCAACCCCTTGCTCATCGCCTG
|
|
| Amino Acid Sequence |
>DNA ligase
MTAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEG LDQPGAVDYSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSHIGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPV EVPSECPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLQFEQVVGLEGFAE VSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAG QTWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAEQGIAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|