Pseudomonas putida YKD221, TR32_RS21085 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAGATCGGCGACAACCTCGATGTGTTGGTGATCGATACCGCTGCGGGTATCGGTGACTCGGTGGTCAGCTTCGTTCGCGCCGCCCAGGAAGTGC TGCTGGTGGTGTGTGATGAACCTACCTCGATTACCGACGCCTACGCGTTGATCAAGCTGCTCAATCGCGACTATGGCATGAACCGTTTCCGTGTGTTGGC CAACATGGCGCAGAGCCCGCAGGAAGGGCGCAACCTGTTTGCCAAGCTGACCAAGGTCACCGACCGCTTCCTTGACGTTGCCCTGCAGTACGTGGGTGCC GTGCCGTACGACGAGTGCGTGCGCAAGGCGGTGCAGAAGCAGCGTGCCGTCTACGAAGCCTTCCCTCGCTCCAAGTGCGCGCTGGCCTTCAAGGCGATTG CCCAGAAGGTCGACAGCTGGCCGCTGCCGGCCAATCCGCGCGGCCATCTGGAGTTCTTTGTCGAGCGCTTGGTGCAACCCACCAGCGCGGGACCCGTACT
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| DNA Sequence for Gene |
>TR32_RS21085
|fliA
ATGAACGCCAGTGGCTTCAAGATGTACAGCCGGGCGGCGAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCGTACC ACCTGTTGGCGCGGTTGCCGGCCAATGTGCAAGTCGAGGACCTGATCCAGGCCGGCATGATCGGCCTGCTGGAAGTGGCCAACAAATACGACGCCAGCAA GGGCGCCAGCTTTGAGACCTACGCCGGCATCCGCATCCGCGGGGCCATGCTGGACGAAGTGCGCAAAGGCGATTGGGCACCGCGTTCGGTACACCGCAAC ACCCGTATGGTCAGTGATGCCATGCGTGCAGTTGAGGCCAGAACAGGCCGTGACGCTAAAGATCATGAAGTTGCTGCCGAACTCCAATTGAGTCTCGATG ATTACTACGGGATCTTGAACGATACCCTGGGCAGCCGCCTGTTCAGCTTCGACGACCTGTTGCAGGACGGCGAGCACGAAGGGCTGCATGAGGATGGCGC CAGTGGCCAGGTCGAACCTGCGCGCGGCCTGGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCTATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTG CTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCAGCCAGTTGCACAGCCAATGTGCCG CGCGCCTGCGCAGCCGCCTGGGGGAATGGCGGGCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCACTGTCGTTGCAGTCGTTTTCCACGTTGTACCGAATTGAATGAGTGCGTGCTCGGTAGGCCGAGCGCGTTTGAGACTGCTTGGAGGTCTAATTGGA CAAGAACATGAAAATCCTCATCGTTGACGACTTTTCGACGATGCGGCGGATCATCAAGAACCTGTTGCGTGACCTGGGTTTCACCAACACCGACGAAGCC GATGACGGCACCACGGCGTTGCCGATGCTGGAAAACGGTCACTACGACTTCCTGGTGACCGACTGGAACATGCCGGGCATGTCCGGCATCGACCTGCTGC GTAAAGTGCGTGCCAGCGACAAGCTGAAAAGCATGCCGGTCTTGATGGTGACCGCTGAAGCCAAGCGCGACCAGATCATTGAAGCGGCACAGGCCGGCGT CAATGGTTACGTGGTCAAACCGTTCACCGCTCAGGTGCTCAAAGAGAAGATCGAGAAGATCTTCGAACGCGTCAACGGCTGAGTCACGTCAGGGGGGCGC
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| Amino Acid Sequence |
>DNA-directed RNA polymerase sigma-70 factor
MNASGFKMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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