Pseudomonas putida YKD221, TR32_RS22080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCGATCTGGCGCAACGGCTGGCTGTGGCTGAACTGGACCCCGAGCAATTGCAGGGACGTGCTGCGTTCCGTTGCACCAGCCCGGATTACCTGCCGATC GTCGGGCCCATCGCCGACGCGCAGGCGTTTGCCGAAGCCTATGCAGTACTGGGCCGGGATGCGCGGCAAGTACCGGATGTGCCCTGCCCTTGGCTGGGCG GGTTGTATGTGAACAGCGGGCATGGCTCACGCGGGTTGATAACAGCGCCCTTGAGCGGCGAGCTGGTGGCGGCCTGGGTATGTGGCGAACCGCTGCCATT GCCGCGGGCAGTGGCGCAGGCGTGTCATCCGAACCGGTTTGGATTGCGCCGGTTGATCCGGGGGAAATGATTGCATCGGGTTGCCTGCCCGTCCACATAT AACCAAACATTCTAAAACTCTCGAAAAGCACATAGGTCAGTTCCTTAAGGTGCCCTAATCCGGGGCATCACCTCCCCAACGGAAAAACCGGTAAGGACTT
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| DNA Sequence for Gene |
>TR32_RS22080
ATGTGCGGATTAGCAGGAGAGTTACGTTTCACCCCCATCGACCAAGCCCCTCGCCCAGCCGACCTGGCTGCGGTAGAGCGCATTACCCATCACCTGGCCC CGCGTGGCCCGGATGCCTGGGGCTTCCATAGCCAGGGGCCGATTGCCCTTGGCCACCGGCGGTTGAAGATCATGGACCTGTCCGACGGCTCGGCGCAGCC GATGGTCGACAACACCCTAGGCCTGTCGCTGGCCTTCAACGGCGCCATCTACAACTTCCCCGAGCTGCGCCAGGAACTGCAAGACCTGGGTTACCAGTTC TGGTCCGATGGCGACACCGAGGTGCTGCTCAAGGGCTACCACGCCTGGGGCGCGGCGCTGCTGCCCAAGCTCAACGGCATGTTTGCCCTGGCCATCTGGG AGCGCGACAACCAGCGCCTGTTCCTGGCCCGCGACCGCCTGGGCGTCAAACCCCTGTACCTGTCGCGCAACGGCGAGCGCCTGCGCTTTGCCTCGACCCT GCCGGCACTGCTCAAGGGCGGCGACATCGACCCGATGCTCGACCCGGTGGCCCTCAACCACTACCTGAACTTCCACGCCGTGGTACCGGCACCGCGCACC CTGCTGGCCAATGTGCAGAAGCTGGAGCCCGGCACCTGGATGCGCATCGACTGCCATGGCGAAGTGGAACGCCAGACCTGGTGGCAGCTGAAGTACGGCC CCCACCCCGACGAGCGTGAACTTGATCTGGAAGGCTGGACCACCCGCGTACTCGACGCCACCCGCGACGCCGTAGCCATCCGCCAACGGGCAGCCGTCGA TGTGGGTGTGTTGCTGTCCGGCGGTGTCGATTCCAGCCTGCTGGTCGGCTTGCTGCGCGAAGTGGGCGTTGACGACCTGTCGACCTTCTCCATCGGCTTT GAAGATGCCGGCGGCGAGCGTGGCGACGAGTTCCAGTATTCGGACCTGATCGCCAAACACTACGGCACCCGTCACCACCAGTTGCGCATTGCCGAACACG AAATCATCGACCAACTGCCGGCCGCCTTCCGCGCCATGAGCGAGCCGATGGTCAGCCACGACTGCATCGCGTTCTACCTGCTGTCGCGGGAAGTGGCCAA ACACTGCAAAGGCGTACAGAGCGGCCAGGGTGCCGATGAGCTGTTCGCCGGTTACCACTGGTACCCGCAGGTGGACGGCGCCGACGATGCCTATGCGGCC TACCGTGACGCCTTCTTCGACCGCAGCCATGCCGAATACCGCGAAACCGTGCAGGCGCCCTGGCTGCTGGAAACCGACGCTGCCGGCGACTTCGTGCGCG AACACTTCGCGCGCCCCGGCGCACCGGCTGCCGTGGACAAGGCGCTGCGCCTGGACAGCACCGTGATGCTGGTCGACGACCCGGTCAAGCGGGTGGACAA CATGACCATGGCCTGGGGCCTGGAGGCGCGTACGCCGTTCCTCGATTACCGCCTGGTGGAACTGTCGGCACGCATTCCCGCCCGCTTCAAGCTGCCCGAC GGCGGCAAGCAGGTGCTCAAGCAGGCGGCGCGACGGGTGATCCCGCATGAGGTGATCGACCGCAAGAAGGGTTACTTCCCGGTACCGGGCCTGAAGCATC TGGAAGGTGCCACCTTGGGCTGGGTACGCGAACTGTTGACCGACCCCAGCCAGGACCGAGGGTTGTTCAACCCGGCCATGCTCGACCGCCTGCTGAGCAA CCCACACGGCCAGCTGACGCCATTGCGCGGCTCCAAGCTGTGGCAACTGGCGGCGCTGAACCTGTGGCTGAGCGAACAAGGAATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGATGAAAGCCCATGAAATCGCTTATGGTCAGCGCCTGCTACGCGGCCAGGCGCCGTCCTACGAGCGCCTGCAGGCGCGCCTGGCCGGCGACGGCAGCC AGCCCCACGACCAACCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGATAGGACACACCTACCCCGACCCGGCTTCCCTGGCCGAGGATCTGCTCGA CGAGCACCCGGGCGAACGCGACATCGCCCTGTACGTGGCCGCACCGCAGCAGGTGCTGGCCCAGGCCCCCCAGCAGCTGTTCCTAGACCCGTCCGACACC CTGCGCCTGTGGTTCACCGACTACCGCCCGGCGCAGCGGGTATTTCGCGGCTTCCGCGTGCGCCGGGCACAGAACCCCGCCGACTGGCAGGCGATCAACA CGCTGTACCAGGCGCGCGGGATGCTCCCCGTCGACGCCGAGCTGCTTACCCCCCGGCACTTGGGTGGCCCGGTGTATTGGCTGGCAGAGGACGAAGACAG
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| Amino Acid Sequence |
>asparagine synthase
MCGLAGELRFTPIDQAPRPADLAAVERITHHLAPRGPDAWGFHSQGPIALGHRRLKIMDLSDGSAQPMVDNTLGLSLAFNGAIYNFPELRQELQDLGYQF WSDGDTEVLLKGYHAWGAALLPKLNGMFALAIWERDNQRLFLARDRLGVKPLYLSRNGERLRFASTLPALLKGGDIDPMLDPVALNHYLNFHAVVPAPRT LLANVQKLEPGTWMRIDCHGEVERQTWWQLKYGPHPDERELDLEGWTTRVLDATRDAVAIRQRAAVDVGVLLSGGVDSSLLVGLLREVGVDDLSTFSIGF EDAGGERGDEFQYSDLIAKHYGTRHHQLRIAEHEIIDQLPAAFRAMSEPMVSHDCIAFYLLSREVAKHCKGVQSGQGADELFAGYHWYPQVDGADDAYAA YRDAFFDRSHAEYRETVQAPWLLETDAAGDFVREHFARPGAPAAVDKALRLDSTVMLVDDPVKRVDNMTMAWGLEARTPFLDYRLVELSARIPARFKLPD GGKQVLKQAARRVIPHEVIDRKKGYFPVPGLKHLEGATLGWVRELLTDPSQDRGLFNPAMLDRLLSNPHGQLTPLRGSKLWQLAALNLWLSEQGI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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