Pseudomonas putida YKD221, TR32_RS22260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTATCATCACCTTATTATCAGTATTAATTATAGGCACCTACCAGATTCAAAGCGCAGGTGTAACATCCCAGTATATTGCCTCTGCCAAACTTACTCAAG GACACGATGAAGCACTGGCCTCGAGCATCTACCAGGCGATCATCCAAACTTCCGGAAACGAGACAGCATCTCAACATACTCCAATTGTGATAGACGTTTA CGGACACAAACCCTTTGAAACACTATATGCGAAAGCACTCACCTCAACTACACAGGCATCTTTTTTTGACTGGGATAACGGCAATCTATTGAGAATCACA ACGTACATGAGGTTACTTGGATTCAACAATATCTTGCCAGCCGACGAGAAAACCCGTCAAACATTGACTCCTTATTTTTCAGGCATGCCTACCTGGCCAC TTCCAGGCTCGATTATCAACGTTAACGGCACCTACCTTATCAAACTAAGCGAAGATGCTGACCCAGCGCATCTTCCAACCAAATAACGATAGAGATCTAT
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| DNA Sequence for Gene |
>TR32_RS22260
ATGCACAACAATCATCTCATCCCCCTTTTCTCCGCTGAAATAGTGAATACTGGTATTGATTTCCTGTCTCCCTTGAAAACCGTTCTGGACAGCCACTGGT ACATCCTTGGCACTGAAGTGAAGCAATTCGAGGAAGCGTTTGCTCGTTATGTCGGTGTCGACCACTGCATAAGCGTCGCCAATGGTTCGGAGGCACTGGA GCTCGCACTTCGCGGCCTGGGCGTTGAACAAGGCAGTCGCGTGGTAGCGATCGCCAACGCCGGCTTCTATAGCAGCACCGCCATTCATGCCATTGGCGCA GAGCCCGTCTACGTCGATGTAGACGCAGAGACGCTGACCATGTGCCCCAATGCATTGGCGCAGGTTATCGAAAGCAAGCCTGCTGCGGTCATCGTGACGC ACCTGTATGGGCAACTGGCCAATATCGAAGAAATCGTTCGCATCGCTCAGGCCGCTGGCGTACCGGTCCTCGAAGACTGCGCACAGTCCCACGGTGCACG ACGCAATGGCCAGCAGGCCGGCAGTTTCGGTGACATCGCCTGCTTCAGCTTCTACCCCACGAAGAATCTCGGCGCCCTGGGTGACGGCGGCGCTGTGGTT ACCCGCAACGACCAGCTTGCCGCCCGCATTCGCCAGCTGCGTCAATATGGCTGGTCGCAAAAATACCAGGTCGCCATTGCTGGCGGTCGCAACAGTCGCC TCGATGAAATGCAGGCCGCTATCCTGCGCGTGAAACTTCCGCTTCTCGATGGCTGGAACGAGCAACGCCGCTCTATCGCTCAGCGCTACAATGCCGCGTT CGCCTCGCTGGACCTGCAACTGCCTGCCTCTACGGGCGAGGACTATGTTGCTCACCTGTACGTTGTCCGAGTCAAAGACCGCGCAGCTTTCGCTGCAGCG CTCAAGGAAAGGCTTGTCAGCACCGATATCCACTACCCGATCGCCGACCACAAACAGCCTGCCTATAACGCCACACCGCCCCAGTCGCTCGTGGTGACCG AACAGGCCTGCAGTACTGTCATCTCCCTGCCCTGCTTCCCGGGACTCAAAGATGAAGAAGTGAATCGGGTCATCGACGCCGTCAAGGAATTCTTCACCAA GGAGCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTTGCTGACGCTGGTCATCCCCGTTTATCGCAATGAAAGCAACCTGCCCGACTTGTTGACGGCAGTGGCTGACCTCAACCTTCAGCTCGAAGGTGAGCT GGAAGTGGTGTTCGTTATTGATGGCAGCCCTGACCGTTGCTATGAAATTCTTCGCGACACGCTGCCATCCCAGCCATTCCGCTCCAAGCTCGTCCTGCTG TCGAAGAATTTTGGCTCGTTCATGGCTATCCGAACTGGTCTGCAACACGGCAGCGGCGATCGATATGCGGTGATGGCAGCAGACCTGCAGGAGCCGCCGG AGCTGGTGCTCGAAATGAACCGTGTGCTGCTGCGGCAAAATACCGATGTCGTGGTCGGTGTGCGGGAAGGCCGTGAAGATCCATGGGCGTCTCGCACAGC ATCGAAAATCTTCTGGGGGCTCTACCGCCGATACGTCATCCCGGAGATTCCTCCGGGTGGGGTCGACATGTTCGCCTGCAACAAAGCGTTCAGAGACACA
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| Amino Acid Sequence |
>erythromycin biosynthesis sensory transduction protein eryC1
MHNNHLIPLFSAEIVNTGIDFLSPLKTVLDSHWYILGTEVKQFEEAFARYVGVDHCISVANGSEALELALRGLGVEQGSRVVAIANAGFYSSTAIHAIGA EPVYVDVDAETLTMCPNALAQVIESKPAAVIVTHLYGQLANIEEIVRIAQAAGVPVLEDCAQSHGARRNGQQAGSFGDIACFSFYPTKNLGALGDGGAVV TRNDQLAARIRQLRQYGWSQKYQVAIAGGRNSRLDEMQAAILRVKLPLLDGWNEQRRSIAQRYNAAFASLDLQLPASTGEDYVAHLYVVRVKDRAAFAAA LKERLVSTDIHYPIADHKQPAYNATPPQSLVVTEQACSTVISLPCFPGLKDEEVNRVIDAVKEFFTKEH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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