Pseudomonas putida YKD221, TR32_RS22225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATGAAGAATTGCTGATTGGTGATCAGGTAGTGAGCACGGACCATCCGATGATCATGGCTGCGCATGAGGATCACCTGTCCTGGGATGTGCTCAAAGATA AGCTTTCCGCGCTGCTCGCAGCGATTTCCACGGATGATTATGTTCGTGTCCGGCAGTTGCTGCGTGAAACGGTCAGCGGTTATTCGCCTGACGGTGAGAT TGTTGATTGGATTCACACCCAACGCAGGGTCGATTCTTGAAAAAACGTCCGGCGCAGTCATTGCCCGCTGGTCAGAAGTTTCAAGCGCTCAAGGGCTTAC GTTGGTGTCGGTGTGATTATGTTATCAAGGGTAGCGGTTTTGTATGTAGAATCCTTTGTCGTTTTCGCTTAGGTAAGTTTGCCTCTATTGAATCGTGGGA ACGCAAAAGTGGCATCGCTTGTGGTCATTTTGTGCCGTTGCTTCCATGGATAGGGTGAATACTTTTCGATTTTTGTCAGGCCCCAAGGTAGAAAATTCTC
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| DNA Sequence for Gene |
>TR32_RS22225
GTGAAGATTTTAGTAACAGGTGGTGCAGGCTTTATTGGCTCAGCCGTCATTCGGCACATCATTTCCAATACGGCTGACTCTGTAGTCAACGTCGACAAGC TCACCTATGCGGGGAACCTCGAGTCTCTGCAATCCGTCGCTCAGAATCCACGGTATGCCTTTGAGCACGTTGACATCTGCAGTCGTGAGGAGATGGATCG GGTGTTCCGCGAACATCAGCCTGATGCGGTGATGCACCTGGCTGCCGAGTCCCATGTCGACCGCTCTATCACCGGGCCGTCGGCGTTCATCGAAACCAAT ATCATTGGTACCTACGTCCTGCTCGAAGCCGCGCGTGGCTACTGGTCCGGGCTCGACGAAGCACGTAAGTCGGCATTCCGTTTCCACCATATTTCCACTG ACGAAGTCTATGGTGACCTGGAGGGGCCGGAAGATCTCTTCACCGAAGCGACCCCCTACCAACCAAGCTCCCCCTACTCGGCGAGCAAGGCCAGTTCCGA CCACCTGGTACGCGCCTGGGCCCGCACTTATGGGCTACCGACCCTGGTGACCAACTGCTCGAACAACTACGGGCCGTTCCACTTCCCTGAAAAACTGATC CCGCTGGTGATTCTCAACGCACTGGAGGGCAAGCCGCTGCCTATTTATGGCAAAGGGGATCAAATCCGCGACTGGCTGTTTGTCGAAGATCATGCGCGTG CGCTGTATAAGGTCGTGACCGAGGGTGAAGTCGGCGAAACGTACAATATCGGTGGCCACAACGAGAAGCAGAACATTGAAGTTGTGCGAACTGTTTGCGA GTTGCTTGATGAACTGCGCCCTGACTCCGCGTTCGCTCCGCATTTCAACCTGGTGACCTACGTTACCGACCGACCTGGCCATGACGTACGTTATGCGATC GACGCCAGCAAGATTCAGCGTGAACTGGGTTGGGTGCCGGAGGAGACCTTCGAGTCCGGTATTCGCAAGACTGTTGAGTGGTACCTCAGCAACGCGGAGT GGGTAGCGCACGTCAAGAGTGGCAGCTACCAGCAGTGGATCGACACGAATTACACCGCGCGTGCTGAAAAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGTTCTGTTGCTGGGTAAAGACGGACAGGTTGGCTGGGAGTTGCAACGTGCCCTGGTAGTCATGGGTGAGATCGTCGCCTTGGGCCGGAATCCGGTGTC TACCTCATATGGCACGCTCAGCGGTGATTTGTCGGACCTGGACGGGTTGCGCCAGACCATCCGTGCTGTTGCGCCTGATCTTATCGTAAATGCCGCAGCG TACACTGCTGTCGACAAGGCGGAGACTGAGCAGGAACTCGCCCGTAAGGTCAATGCCTTGGCTAGCGGGGTGATTGCTGAAGAGGCAAAGCGTCTGGATG CATTGTTCGTGCATTACTCCACGGACTATGTGTTCGATGGTGCGGGTACAAGCCCCTGGAAAGAAAGTGATAGCGTATCGCCGGTAAACTATTACGGCGC CACCAAGTTGGAAGGCGAGCAGCTGATCGTCGCCTCAGGTTGCAACTATCTGATTTTCCGGACCAGTTGGGTCTACGCGGCAAAAGGGAACAATTTTGCC
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MKILVTGGAGFIGSAVIRHIISNTADSVVNVDKLTYAGNLESLQSVAQNPRYAFEHVDICSREEMDRVFREHQPDAVMHLAAESHVDRSITGPSAFIETN IIGTYVLLEAARGYWSGLDEARKSAFRFHHISTDEVYGDLEGPEDLFTEATPYQPSSPYSASKASSDHLVRAWARTYGLPTLVTNCSNNYGPFHFPEKLI PLVILNALEGKPLPIYGKGDQIRDWLFVEDHARALYKVVTEGEVGETYNIGGHNEKQNIEVVRTVCELLDELRPDSAFAPHFNLVTYVTDRPGHDVRYAI DASKIQRELGWVPEETFESGIRKTVEWYLSNAEWVAHVKSGSYQQWIDTNYTARAEKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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