Pseudomonas putida YKD221, TR32_RS22405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATCGCCGTAGACATGGGCAGCGTCTCGATCAAGGACATGGGCACCGCCGAAAACCCGACGGCTGGCCGCGTGACCGGCAAGGACTTCAACCTCAACGTCA ACTGCAACCTCGGCACCAAGGTGGCGATGATCTTCGATGCCAACAGCGGCGGCTCGGGCCTGGTGACCGGCAAGAAGGTCCTGGCGCTGACCAAAGGCAC CGGCACTGCCGCCAACGTTGGCATTGCCCTGCTCGACCCTAATGGCAACCTGATCGACCTGAGCTCGGCTGCCACTGCCAAGATCCAGAGCGACGTACAC GGCACTGGCGCCGAGGGCGGCGACGCCACCCTGAGCTTCTCTGCGGCGTACGTCACCACGGGCGCCGCCGGCACTGCCACCGCCGGTCGCGGTGACGCCA CCCTGCCGTTCATCCTGCAGTACGAGTAATCACTTCGCCGCTGCTCCCTGCGCGAGGCTGACCAGCCTCGCCACTTCTTCGCCCCGCAAGGTAACCAACC
DNA Sequence for Gene
>TR32_RS22405
ATGTTGCGTCGTTCTCTGTACCCCGTTCTCGGGTTGCTGGGCATGCTCGTCGCCGCCCAGGCAACTGCCAGCATCTCCCTGAGCGCTACGCGCGTCGTGT TCGACGGTGCGCACAAAGAAGCCAATGTCATCGTGCGCAATGGCAACCAGGAAGTCCTGGTGCAATCCTGGGTAGATGCCGGCGACCGTGCACAGGCACC GTTCGCCATTACTCCACCGTTGGCCAGAGTATTGCCCAAGCAGGAACAACTGCTGCGTATTCTCTATGAAGGCCAAGGCCTGCCGACCGATCGCGAGTCG GTGGTCTGGCTCAATGTCCAGGAAATTCCGCAAGCCAGTACCCAGGCCAATACCTTGCAGTTGGCGGTGCGCCAACGTATCAAGATTTTCTTCCGCCCGG CCAACTTGCCCGGCAATGCCCTGCTGGCCCCCGAACAACTGGTCTGGCAATTGACCCAGCGCGCCGGGAAGCCACAACTGACCGTGAACAACCCCAGCCT GTATCACGTGTCGATGGCCGATATCGAACTTAAAAGCGGGAAACAAACCGTGCTTAACGCCGATTCGACCATGATCGCCCCTGGCGAACAAAAGACATTC ACCTCGGTATTTTCCCAGGTGGACGGCCCGTTGACGCTGACGTTCAAGAGCATCAACGACTATGGCGCCCAACATGGATATTCCTTGCGTTTGAACACTG CCCAGCCGGGTAGCGCCAAGCCTGCCGAACCCGCCATCACCTTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATCGTAGCCCCCACCTCGTGCCCTGGTCGCGTGCGGCCTCCCCGTGCCCAGCCCGTGCCGGGATATGAAATAGGTTTCTGGTATGTCTCTGTCCATCGC CCCCCACCCCGTCGAGGGAGCCGATGCAGGCGCGCACGCGTTCAGTGGCGGCACGCTTCGTCCGGCCTGGAAGCTCAACGCCCTGTCATTGGTCATCTGC ACCGCGCTGCCCAGCCTTGCATCGGCGCAGGACGCCGCCCACCTGCAGGGCTTCAACACCACCTTTCTGCAGGGCGCGCAATCGGCGGTCGACCTGCAAA TGCTGCTGTCGGCCAACAGCGTGCTGCCGGGCAACTACCGGGTAGACCTGTACAGCAACGAAGTGCTGGTAGGCCGGCGTGACATCGAATTCAACCGCCA CCCACAGACTGGGCGGGTGGAACCCTGCCTGACCCTGGAACTGCTCGAGCAGCTGGGTATCGACATGGACAAGCTCAAGGCACAGGGGCGCCTGGATACC
Amino Acid Sequence
>pilus assembly protein
MLRRSLYPVLGLLGMLVAAQATASISLSATRVVFDGAHKEANVIVRNGNQEVLVQSWVDAGDRAQAPFAITPPLARVLPKQEQLLRILYEGQGLPTDRES VVWLNVQEIPQASTQANTLQLAVRQRIKIFFRPANLPGNALLAPEQLVWQLTQRAGKPQLTVNNPSLYHVSMADIELKSGKQTVLNADSTMIAPGEQKTF TSVFSQVDGPLTLTFKSINDYGAQHGYSLRLNTAQPGSAKPAEPAITL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site