Pseudomonas putida YKD221, TR32_RS25295 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATCGGCACGCAAGATGAACATCACGTACTTGAACGAGACCACCCACAACAACGACCAAAGGATCAGCGACAGGATCCCCAGCACACCATCATGGTTGAC CGACACCCCGTAGCCGCCGGTAAAGACTTCCTTGAGGGTATACAACGGGCTAGTGCCGATATCGCCATAAACCACCCCGACCGCCGCCACGAGCAGGCCC ACCGACCGTGACGCACCCTGCTTCCCCTCGTGCCCGCCCTCAGCGTGACTGCTTGCCTGAACCATCGACCACTCCCGCAAACGGCCATCACGGCCCTTGG TAATCAATCTGCCACCAGGCCCTGGAAGGTACCCCGGCGCAACGGCGCGAAGCATAGCGCAGCGTTCGTCGTATTTCTGCTGGTCAAGCGCCCTTGCGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAAAAGCGCCCGTCAAGTTCGCCCCCGATTCCGGCCGGGCGACCTGTATTCAATACCGAGGTTAGTC
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| DNA Sequence for Gene |
>TR32_RS25295
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCAAAAGCCCTGGTCGACTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTACCCACCTACGAGGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAATCGCTGGAAGTGAT CGGCGAAGCGATCAAGGAAAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTCGAAGAAGGCAGCATCCGTGACGTGCACCCAAGCGTGCTGTCGGTC ACTGGTCCGCAGCAGTACGAGCAGGTAGTCAACGCCGTTCACGAAGTGGTGCCGCCGCGTCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCACAGG GCGTCAAGCTGACCCCGCGCCACTATGCCTACCTGAAGATCTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTGGGTGAAGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTGAAGGAAATCCTGGTGATTTCCCAGGACACCAGCGCCTAC GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTGAAGACCCGCATGCTCGAGCTGTGCGAAGCACTGAGCAGCCTGGGCGCCTGGG TCCGCCTGCACTATGTGTACCCTTACCCGAACGTTGACGACGTGATCCCGCTGATGGCTGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTTCCAGCA CGCCAGCCCGAAAGTGCTCAAGTCGATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCGCGCATCAAGAACTGGCGCGAGCAGTGCCCTGAGCTGGTG ATCCGCTCCACCTTCATCGTCGGCTTCCCGGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTCGACCGCGTGGGCT GCTTCCAGTACTCGCCGGTGGAAGGCGCCCCGGCCAACGACCTGGGCTTGGCCGAAGTACCGGACGACGTCAAGCAAGAGCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGTGCTGCCCGCCTGCAATTGCGCATCGGCAAGGAAATCGACGTGCTGATCGACGAAGTCGAGGAACAAGGTTCGGTTGGCCGC AGCTTCTTCGATGCACCGGAAATCGATGGCAGCGTGTTCATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCG ACGAGTACGACATGTGGGCTGAACCCATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGC CCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGGACTTTCCACTGCTGGTTGAGCTTGTGGGTGAGGAACAGGGTAAGCTCCTT GATCTGCGCCCCGGTCGAGACCACTTTCTGCCGCCAATCGTAGGAGGCGCCGGCCGAAGTACCGACCGCCACCGGCAGGGCAAAGCCGAGACTGGCAAAT ACCGGGTCATCGAAGTCGCTATCGGGCGGGTCACCGAACTTCTTCCAACCCAGCGTCGCGAAACCGGTGACCGGGCCAAAGCCCTTGGCTATGTCGACCT GGGTGGTGTAATCGTACTGGCCGGTGCCCAGGCACTGGTCTTCATCAGCGGTAGGGAATTTGACCTTGCCGATCAGGTCCAGCATCAGGCCGCCGTCACG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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