Pseudomonas putida YKD221, TR32_RS25995

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATTCGCAAGTTGCTGCAGTGCGACATCAATCCAGGCGTCATCTTCGACCACGCTACGGTTGCCACCCTTGCCCAGGCGCTGCGCGAGCGCGAAGCCAACC CTGGCCAGTTGCTCAAGCTGGCCCAGGCCCGTCTGCGGCTCGACAGCATGAGCCCTGAAGAAAAAGCCCGGCTGCTGGAAAAGAGCCGCTGAGCCTCACC ACGCCCAGGGGCGGGCAACCCGCCCCTGGGGTCATTTGCATTGCCTCCCCCGTACTGCCGTGCCGATTGCGTGGAAGGATGCCGGCGAGATACTAATGCA AAAAATTCTCATTCTGGATTTTCCAGGGTGATGCGTCTTATGTAGGAGCGCGCTGAAAGCCACACGTGGCAAGCCGTTTTGACTTGCGTGTCAGGCGTCT GTCGCGGGATCTGTCCGGGGGAGGATGGGCAGCTCGGCCGTTTGGGGGCCGTTGGCGGGCGCGGGACGATTTCATTACACGATATAAATAGAGAAATACC
DNA Sequence for Gene
>TR32_RS25995
ATGCCAGCAGGATTTTTCGAGTTCAAACCATTGGTCAAGGCGCTTTGCATGTCCCGCTCGATCAGCGCCCGCTCATCACGGGCGTTGCTCGGCAAAGGGG TGCTGGGCGCCGCATTGATGCTGCCCATGGCCGCCCAGGTCTGGGCTCAGGGGGTCAACTTCGACATCGCTGCCCAGTCGCTGCCCAACGCCCTGCGTGC GCTTGGCGAGCAGGCCGATGTGCAGTTCATCTACAACGCCTCGGAAATGGCCGACCTGCGTGGCAATGAAGTGCGTGGCAGCTACACCGTCGATGCGGCA GTGGCCAAGCTGTTGCGCGGCTTGCCGGTCAGCTACAGCCTGGAGGGCGATACCCTGACCCTGGTGCGGCGTGAGCGGCCAGCGTCCTCGGCGCTGGAGC TGGGCACCACCAGCATCACGGGCAACACGTTGGGCGTGACCACCGAAGGCAGCAACTCGTATACCACCGGTGGCGTCACCATCGGCAAGAGCGAACACAA GCTCAAGGACATTCCGCAGAGCGTGTCGGTGATGACCCGCAAGCGCATGGATGACCAGAACATCACCGACTTGCCGACGCTGTTGGCCAACGCGCCGGGC ATGACCTTCGCCAAAAGCCCGGGTACCGGCGGCTTCATCACCTCGCGCGGTTTTGAAATCGATTCGCTGCAGTACGATGGCGTGCCCATGACCCGTGGCA TCTACGCGCTGGGCAGCTACCTGACGGAACCGACGGCATTCTATGACCGTGTCGAACTGCTGCGTGGCGGCGCTGCGCTGCTGCAGGGGGCCAACAGCCC CGGTGGCGCGATCAACTTCGTGCGCAAGCGCGGCCAGGCCAAGCCGACAGTCACCCTGACCGCCCAGGCCGGTTCCTGGGACCACTATGCCACCCAGGTT GACGTTGGCGGCCCGCTGAACGAGGCGGGCAACATCCGTGGGCGTGCCGTGGTCGACTACGATACGCGCAACTCGTTCATCGACTATGTGGGCGGCTGGG AGCAGAAGGTCTACGGTGCGCTGGACTTCGACCTGTCTGAAGACACCACCCTCGGTGTCGGCATCAGCGATCGCAAGACGCGTTTCACGCCCATGGTCGC CGGTTTGCCGCGCTTCAGTGATGGCCGGGACGTAGGCTTGTCGCGCTCGACCTTCACCGGCTCCGACTGGAACCGCGGCATGACCGAGCAGCTGGCGTTG TATGTCGACCTCGAGCACCGCTTCAACGACCACTGGAAGTTCAAGACCGCGGCGGTGGCGATCAACGAGCGCAACGAAATGACCTACGCCTACGTGGTAG CGCCGACCGGCCTGGCCAACGATGGGTCTGGGTTGTTCGACTGGCGCTATGCCACCGATTTCAACTCCCACAGCCGCGGCCTGGACATGTTCGTCGATGG CGACTTCAACGGTTTTGGCTTCGACCAGGAAGTGGTCTTCGGCGGTAACTACTCACGCTTCACCAGCGACAACACCATGGCGGTGGTGCGCAGCGCGGGG GCGAACATTTTCGATCTCGACAACCACTTGCCCTTCGAGAACTACGACAGCCTGGCGGCCCGTGGCACGCGTACCGACAGCCAGTACAAGATCGTGCAGA AAGGTATCTACGGTACCTGGCGCGTCAAGCTGACCGACCCGCTGACCTTGATCCTGGGCGGGCGTACCAGCTGGTACTCCTATGATTACGATTCCCAGGT CTATCAGGCCGGCGTCCATCAATACGACAGCCCGGCCTCCAAGGCCAACAACGGTGTTGTCACCCCCTACGCGGGCCTGGTTTACGAATTGACGCCGCAA TGGTCGGCCTACGCCAGCTATGCCGACGTCTTCATCCCGCAGAGTGCCATTGGCGTGGGTGGTTCCACGATCGAGCCGATCACAGGTAGCAACTACGAGC TGGGCTTGAAGGGCGAGCTCAACGACGGCCAGGTCAATACCAGCGTCGCGCTGTTCCGCTATGACCATGAAAACCGCGCGGTGCCGATTCTGAACACCGA ATCGTTGTGTGGCGGCTCCAACTGCGCGGCAGCGTCTGGCAAAGTGCGTAGCCAAGGCCTTGAAGCCGAGATCAACGGTGAGGTGCTGCCAGGCCTGCAA GCGTCGGCCAGTTACGTCTACAACACCACCAAGTACCTCAAGGACAACACGAACGAGGGCAAGATCTTCTCCACCTGGACGCCGAAACACTCGGTGAAGG TGTGGACGGACTACACCCTGCCTGGTGACTTCAGCCGCTTCAGTGTCGGCGGCGGTTTCAACAGCCAGAGCAGCACCGTTGCCTACGACCGCAAATTCGA TTCGCCCGGCTTCACCATCTGGAATGCGCGCCTTGGTTACAAGGTCAGCGATGAAGTCAGCCTGGCGGTCAACTTCAACAACATCTTCGACAAGGTGTAC TACATCCCGTCGTATGCTGCGGTCAGTGCCAACAACTACTACGGCGACCCTCGCAACTTCATGTTCTCGGTCAAATACACCCCACAGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCTGGGGCCACGCAGGCCATCTTGGCGGGTACCCCGCCCAGATGGCCTGCGCCAGGTCACAGCTCCCGCGCTACACGAAAGCCCAGGAAGTCGCCACGT ACCGTGCGTTCGCGATCATTGCGATTGCCCGAACGCGAGAAGATCGGCGCTTCACCCCAGTCATTCCCGCGCATGTGCGCCGCCTGGCAAAGCCCGCCGT CGGCCTCCATCCAGGCGCTGCCATCGCTGGGCGCGCCGACGTAGTCCTTGTGGTAGCAGTCGGCGACCCATTCATACACGTTACCGTGCATGTCATAGAC GCCAAAGGCATTGGGCGGGTAGCTGCCTACCGGTGAGGTGTAGCTGTAGCCGTCCTTGGGGCCGTAGGTATTGGCGTGCTTGCTGATCTGGTAGTCGCCT TCTTCATCGAACGGGAACGGGAACGGCCCGGTGGAGCCGGCCCGTGCCGCGTACTCGCGTTCGGCCTCGCTGAGCATGCGGTAAGTGTGGCCGGTCTTTT
Amino Acid Sequence
>ligand-gated channel protein
MPAGFFEFKPLVKALCMSRSISARSSRALLGKGVLGAALMLPMAAQVWAQGVNFDIAAQSLPNALRALGEQADVQFIYNASEMADLRGNEVRGSYTVDAA VAKLLRGLPVSYSLEGDTLTLVRRERPASSALELGTTSITGNTLGVTTEGSNSYTTGGVTIGKSEHKLKDIPQSVSVMTRKRMDDQNITDLPTLLANAPG MTFAKSPGTGGFITSRGFEIDSLQYDGVPMTRGIYALGSYLTEPTAFYDRVELLRGGAALLQGANSPGGAINFVRKRGQAKPTVTLTAQAGSWDHYATQV DVGGPLNEAGNIRGRAVVDYDTRNSFIDYVGGWEQKVYGALDFDLSEDTTLGVGISDRKTRFTPMVAGLPRFSDGRDVGLSRSTFTGSDWNRGMTEQLAL YVDLEHRFNDHWKFKTAAVAINERNEMTYAYVVAPTGLANDGSGLFDWRYATDFNSHSRGLDMFVDGDFNGFGFDQEVVFGGNYSRFTSDNTMAVVRSAG ANIFDLDNHLPFENYDSLAARGTRTDSQYKIVQKGIYGTWRVKLTDPLTLILGGRTSWYSYDYDSQVYQAGVHQYDSPASKANNGVVTPYAGLVYELTPQ WSAYASYADVFIPQSAIGVGGSTIEPITGSNYELGLKGELNDGQVNTSVALFRYDHENRAVPILNTESLCGGSNCAAASGKVRSQGLEAEINGEVLPGLQ ASASYVYNTTKYLKDNTNEGKIFSTWTPKHSVKVWTDYTLPGDFSRFSVGGGFNSQSSTVAYDRKFDSPGFTIWNARLGYKVSDEVSLAVNFNNIFDKVY YIPSYAAVSANNYYGDPRNFMFSVKYTPQF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site