Pseudomonas putida DLL-E4, DW66_RS22425 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain DLL-E4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTCGGCGCGCAGGATGAACATCACGTACTTGAACGACACTACCCATAGCAGCGACCACAGGATCAGCGACAGGATCCCCAGCACGCCGTCATGGTTGAC CGGCACTCCGTACCCGCCGCTGAAGACCTCCTTGAGGGTATACAACGGGCTGGTGCCGATATCGCCATAAACCACCCCGACCGCCGCCACGAGCAGGCTC AACGACCGCGTCGCACCCTGCTTCCCCTCGTGCCCGCCCTCGGCGTGACTGCTTGCCTGAACCATCGACCACTCCCGCAGACGGCCTTGCAAGGCCAGTA GAATTCCCGATGCGCCAGGTGATACTGATACTCCCGGCGCAATGGCGCGAAGCATAGCGCAGCGTTCGTCGCATTTCTGCTGGTCAAGCGACCCTGCGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAAAAGCGCCCGTCAAGATCGCCCCCGATTCCGGCCGGGCGACCTGCATTCAATACCGAGGTTAGTC
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| DNA Sequence for Gene |
>DW66_RS22425
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCAAAAGCCCTGGTCGATTCCGAGCGCATCCTGACCCAGTTGCGCATGG AAGGCTATGAAGTCGTGCCCACCTACGAGGACGCCGACGTAGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCGTTGGAAGTGAT CGGCGAAGCGATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGTGTCGAGGAAGGCAGCATCCGCGACGTACACCCGAGCGTGCTGTCGGTC ACCGGCCCGCAGCAGTACGAGCAGGTGGTCAACGCCGTGCACGAAGTGGTGCCACCACGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCGCAGG GCGTCAAGCTGACCCCGCGCCATTATGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGTTTCTGCATCATCCCGTCGATGCGCGGCAAACT GGTCAGCCGCCCGGTCGGCGAAGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAGATCCTGGTGATTTCCCAGGACACCAGCGCCTAC GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTCAAGACCCGCATGCTCGAGCTGTGCGAAGCCCTGAGCAGCCTGGGTGCCTGGG TACGTCTGCACTACGTGTACCCGTACCCGAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGATATCCCGTTCCAGCA CGCCAGCCCGAAAGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCACGTATCAAGAACTGGCGCGAGCAGTGCCCGGAGCTGGTG ATTCGCTCCACCTTCATCGTCGGCTTCCCGGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGTTGACCGAAGCCCAGCTGGACCGCGTGGGCT GCTTCCAGTACTCGCCGGTAGAAGGCGCCCCGGCCAACGACCTGGGCCTGGAAGAAGTGCCGGACGACGTCAAGCAGGACCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGCGCCGCCCGCCTGCAACTGCGCATCGGCAAGGAAATCGACGTGCTGATCGATGAAGTGGAAGAGCAAGGTTCGGTTGGCCGC AGCTTCTTCGATGCCCCGGAAATCGACGGCAGCGTGTTCATCGATGGCGACCACGGCTTCAAGCCGGGTGACAAGGTACGTTGCCGCGTGGTGGATGCCG ACGAATACGACATGTGGGCTGAACCCATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCAGCAGCAAACTGAAAAGCCCCTGCCCCGCCATTCCCCACAAGGAACTCCCGGGCCAGGGGCTTTTTCGTCAGAACGCGTGAAAAAGCATCAGGCCGC CCTCTGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGCACTTTCCACTGCTGGTTGAGCTTGTGTGTCAGGAACAGGGTAAGTTCCTT GATCTGCGCGCCCGTCGAGACGACTTTCTGCCGCCAGTCGTAGGAGGCACCCGCCGAAGTGCCTGCAGCCACGGGCATGGCGAAGCCGAGACTGGCAAAT ATCGGGTCGTCGAAATCACTGTCGGGCGGGTCGCCGAACTTCTTCCAGCCCAAGGTCGCGAAACCGGTCACCGGGCCAAAGGCCTTGGCGATATCGACCT GGCCGGTGTAGTCGTATTCACCGGTGCCCAGGCACTGGTCTTCATCGGCAGTGGGGAATTTGACCTTGCCGATCAGGTCCAGCATCAGGCCACCGTCACT
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| Amino Acid Sequence |
>30S ribosomal protein S12 methylthiotransferase
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLEEVPDDVKQDRWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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