Pseudomonas putida DLL-E4, DW66_RS15680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain DLL-E4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCTACCGCCAGCTCCTCGGGCGGTGCGTCGTCCGAGCGTGTTGCCCTGAGCGACTTCAAGATCCGCAAGGCGGTCGACAAGGCTTCGGCCAAGCTGT TCGAACACTGCTGCACCGGCAAGCACATCGCCAAGCTGAAGCTGAACGTGAACCGCGCCGGTGGTGACAAGGTCACCTACCTGACCATCGACATGGAAGA AGTCGTGGTGTCCTCGGTGCGCTTCATCGCCGGTGGCAACCAGAACGGTGAAGACAAGGCTGTGAGCGACCTGCCGGTCGAAGAAATCAGCTTCAACTTC GCCCGCATCAAGACCACCTACACCCAGCAGAACCGCACCGACGGCCAGGCTGGCGGCAACATCGTCGGCGGCTGGGACCGCACCGCGAACAAAGTGTTTG CCTGATAACCTGCGTACCCGGGGGCCGCTACGGCGGCCCACATCCCACAGCGTGCCAGGTGACCTGGCACGCTGTTCATCTGCCATGACCAGAGTGTTTT
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| DNA Sequence for Gene |
>DW66_RS15680
ATGCCTGAAATCCTCAATGACCTTTCGCTGGCAACGCTGACCGCACCCATCGAGGGTGGCAGTGGCGAAGACTTGAGCTTCTCTGCCTTGTTCGACCAGA TCAAGGAGGCACGCCGGGCAGACCCTGACTACCTGACCCAGGGCGACTGGCAAACCGACCTGAAGACCGCCGACTGGGAGCAGGTGGTCAACCTGTCGGC CCAAGGGCTGGCGCAGCAAAGCAAGGACCTGATGCTGGTAGCCTGGCTCAGCGAAGGGTTGGCCCAGCGTGAACATTTCGAAGGCATCACCTTTGGCCTT CGGCTGACCGAACAGGTACTGGAAGCATTCTGGGACACGCTGTACCCAACACTCGAAGATGGCCTGGACGAACGCGCTGCGCGGCTGTCCTGGCTGAAGA CCACGCTCACCGACATTGCCGGTGGCTTGCCCATTACCCAAGGGCAGAATTTTGGCGTGTTGCGCTATGACGAATCACGCTACGTAGAAAACCTTGCCTT GCAGAACCCCAAGGCAATGCAGACCGCGCTGAACGAAGGCAAGATCAACGCCGAAATCTTCCAGCGCTCGGTGGCGCTCAGCGACACCGAACACCTGCGC ACCAAGGCCCTGCAGATCGCCGCCAGCCTGGAGGCCTGCAAAGCCCTGCAAGCCAGTGCCGACCGCCTGTTCGGCCATGAGGCGCCCAGCTTTGCCAGCC TTGCCGACATGCTGTCGCGCGCCAGCCAGCTGGCTGAAAAACTGCTCAAGGACCGCGGCGTCGAACTGCACCCCGCCACTGCGGCAGCGGCAGAGCCCGA AGCCACTGTTGCCCCCACCAGCGAAGCAGGTGAACCGATGAACACACCCGTCCAGGCCACCACGCCTGCGCCGATGCGCACGACGCCACTGACCCGCGAC GAAGCCTTCACCATGCTTGCGGGTATCGCCCAGTTCTTCAAGCAGAGCGAACCGCAAAGCCCGGTGCCCTACCTGATCGAACGCGCCATCAAGTGGGGCA ACATGCCGCTGGAAGGCTGGCTGAGCGATGTGATCAAGGACAGCAACGTGGTGGACAACATTCGCGACGTGCTGGGCACCCGCGAGCCAAGATCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTGTATCGGCTACACCGGCCTGTTCACGGGTAAACCCGCTCCGCCCAGGTTGTACGCGGTCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGTAC AGGCACCACAAATACTGCTAACGTGAGTGCTCTCAACCGCCAAGGACCGCTCAGATGCCGCCACGTTCACCCGCCCCCACCGGCTTCATTCGCGTTCGTG GCGCCCGCGAGCACAACCTGAAGAACATCGATGTGGATATCCCTCGCGACGCGCTGGTGGTATTCACGGGGGTGTCCGGCTCGGGCAAGTCCTCGCTGGC CTTCTCCACCCTCTACGCCGAAGCCCAGCGCCGCTACTTCGAATCGGTGGCGCCCTATGCCCGGCGCCTGATCGATCAGGTCGGCGTGCCGGACGTCGAC GCCATCGAAGGCCTGCCGCCGGCCGTGGCCCTGCAGCAGCAACGCGGCACGCCGAGTGCACGTTCCTCGGTGGGCAGCGTGACTACCCTGTCCAGTTCGA
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MPEILNDLSLATLTAPIEGGSGEDLSFSALFDQIKEARRADPDYLTQGDWQTDLKTADWEQVVNLSAQGLAQQSKDLMLVAWLSEGLAQREHFEGITFGL RLTEQVLEAFWDTLYPTLEDGLDERAARLSWLKTTLTDIAGGLPITQGQNFGVLRYDESRYVENLALQNPKAMQTALNEGKINAEIFQRSVALSDTEHLR TKALQIAASLEACKALQASADRLFGHEAPSFASLADMLSRASQLAEKLLKDRGVELHPATAAAAEPEATVAPTSEAGEPMNTPVQATTPAPMRTTPLTRD EAFTMLAGIAQFFKQSEPQSPVPYLIERAIKWGNMPLEGWLSDVIKDSNVVDNIRDVLGTREPRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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