Pseudomonas putida DLL-E4, DW66_RS15620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain DLL-E4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTCCATATCACCTACGACGTGGACATCGGCGATGCCATCGAGAAAAAGGAGCTGCCCTTCGTCGTCGGCGTACTGGGCGACTTTTCCGGCAACCCGCTGG AGCCGCTGCCCAAACTCAAGGACCGCAAGTTCGTCTACATCGACCGCGACAACTTCAACGGCGTGCTCAAGGGCATCAAGCCGCGCCTGACCTACCGCGT CGACAACACCCTGGCCAAGAACGGCACCCAGCTGGGCGTGGAACTGAACTTCAACAGCCTCGAAGACTTCGAGCCACAGAACGTGGTCAAGCAGGTCGAA CCGCTGCGCAAACTGCTGGAAGTGCGCAACAAGCTGGCCGACCTGCGTAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGC AGAACACCGAGAAGCTCAAGACCCTGGGCAAGGAATTCGGCCGTGAAGCCGAAGTGAAAGACCCATCCAGCAGCGATCGCGCCTGAGCAGGAGCCCGAAC
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| DNA Sequence for Gene |
>DW66_RS15620
ATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGACCTGGTCGAAGTGGAAAACTTCGCGCCACAGGCATCGTTGCTCGACAGCATCATTTCGCAAA GCCGCGTGGCCCGCTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAACTGGTGAACCAGGTGCTCGAGGGCGAGATGACCCCGAGCAAGGA CCTGATCGCCGTGCTCGATTCGCGTATCGCCGAAATCGACGCGATGCTTTCCGAGCAGATGAACGAAATCATGCACGCCCGTGAGTTCCAGCAGCTGGAA GCCTCCTGGCGCGGCCTGAAATACCAGGTAGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAATGCCTCGAAGAAAGACCTGGTACGCG ACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCACTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCGCCTTTCGGCATGCTGAT CGGTGACTACGAGTTCAACCGCAACCCCGAAGACATGTACCTGCTGGAGGAGATCTCGCACGTCGCCGCGGCCGCCCATGCCCCGTTCATTTCGGCCGCC TCCCCCGAGCTGTTCGGCTGGGACTCGTTCACCGAAATGTCCGGCCCGCGTGACCTGGCAAAGATCTTCGACACCGTCGAATACGCCAAGTGGAAGTCGT TCCGCGCCTCGGAAGACTCGCGCTACGTCGGTCTCACCCTGCCGCACGTGCTCGGTCGCCTGCCGTATGGCCCCGATACCACCCCGGTGGAGGAATTCAA CTTCGTCGAAAGCGTCGATGGCCGCGACCACAACAAGTACCTGTGGATGAACGCTGCCTACGCCCTCGGCACCCGCGTTACCGATGCCTTCGCCCGCTAC GGCTGGTGCGTGGCCATCCGCGGCGTGGAAGGTGGCGGCCTGGTCGAAGGTTTGCCAACCCATACCTTCAAGACCGACGACGGCGAAATCGCCCTCAAGT GCCCGACCGAAATCGCCATCACCGACCGCCGCGAAAAAGAGCTGTCGGACCTGGGCTTCATCCCTCTGGTGCACTGCAAGGGCACCGACTATGCCGCGTT CTTCGGCACCCAGTCGGCGCAGAAGCAGAAGCAGTACAACACTGACATTGCCAACGCCAACGCGCGCCTGTCGGCCCAGCTGCAGTACATCTTCGCCACT TCGCGCATCGCCCACTACATGAAGGCCATCATGCGCGACAAGATCGGCAGCTTCGCCTCGCGCATGGATGTCGAGCGCTTCCTCAACCAATGGCTGGCCA GCTACGTGCTGCTCGACGACACCGCCAGCCAGGAAGCCAAGGCCAAGTTCCCGCTGCGCGAAGCCCGCGCCGAGGTGTTCGAAGTGCCGGGCAAGCCAGG TGTGTACAAGGCCGTGACCTACCTGCGCCCGCACTACCAACTGGATGAGCTGACCGCTTCGCTGCGCCTGGTTGCCGAGCTGCCACAGGGCGCGCGCGGC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGCCGGTGTGTACAGGGATGACACATGAGTAACCAGGCCCGCCTGCTGCCCTCGCTGCTCGACCGACTGCTGGACGACCGTCCGTACCAGTCGGCCGA GCCAGCCGTGCAACGCACCTGCTCGTTGAGCGAGTACAAGGCCAGCATCGTCCGTGACCTGGAGGTACTGGTGAACACTCGCCAGAGCCTGGTCGCCGAA GAGCTGGAGGGCTACAGCCAGCTCGGTGGTTCCATCCTCGAATACGGCATGCCCGACTTCATCAGCCGCAGCGTGCTCGACCCGCATGATCGGCGCCTGA TCCAGCAGCAACTGGAACGGGCGATCAGCACAGGGGACCGACGTTTTCGCCGTGTCCGCGTGCAGCTGCTGGCCCAGCAGAACGGCCACCGTATGTTGAC CTTCCGCGTGGACGCCGTGTTGCGTCTGCAGGACATCAGCCGCCAGGTGTCATTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAAC
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| Amino Acid Sequence |
>type VI secretion protein EvpB
MTDKQTAPQQAGDLVEVENFAPQASLLDSIISQSRVARSDTERNRTRDLIGELVNQVLEGEMTPSKDLIAVLDSRIAEIDAMLSEQMNEIMHAREFQQLE ASWRGLKYQVDQTETSTTLKIHLLNASKKDLVRDLKAASEFDQSALFKKVYEEEYGTFGGAPFGMLIGDYEFNRNPEDMYLLEEISHVAAAAHAPFISAA SPELFGWDSFTEMSGPRDLAKIFDTVEYAKWKSFRASEDSRYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFARY GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSAQKQKQYNTDIANANARLSAQLQYIFAT SRIAHYMKAIMRDKIGSFASRMDVERFLNQWLASYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQLDELTASLRLVAELPQGARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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