Pseudomonas plecoglossicida NyZ12, RK21_RS24745
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCGGGCCGCTACCTGGCAACTTCCCGCGGCGCAATCGCATCATCAGTGGCCTGTCGCTGGGCGTGCTGGTGGTCGAGGCGAGCCTGGCCAGTGGTTC GCTGATCACCGCACGCCTGGCTGCCGAGCAAGGCCGCGAGGTGTATGCCATACCGGGCTCCATTCACCACCCCGGGGCCAAAGGCTGCCACCAGTTGATC CGTGACGGCGCGCTGTTGGTGGAGAGCGTGGAGCAGATACTGGAAAGCCTGCAGGGCTGGCAGAACCTGCCGCCTGCGGTTGTGGATAAATTCGACCATC CTCTGCTCGCCCTGCTGCATGCTGCGCCACAAACCAGCGAAAGCCTGGCCCACTGCAGCGAGCTGCCGCTTGCCGACGTGCTGGCGCAGCTGACCGAACT GGAGCTGGAAGGCCGGGTCAGCAATGAAGCCGGGCGTTGGTTTGCCCGCGCGGGCTAAGTACACTGCTCACAAGCAAGGTATATAGGCGGAGTAACAGAA
|
|
| DNA Sequence for Gene |
>RK21_RS24745
ATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCGGGTGCAGTGATCGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACC CGTGGAACGAGGACGCGGTGTATCGCCTGCTGGCGCTGAAGTCGCGGCCTGTGGATAAAGGCCTGATCCTGGTAGCCGACAACATCCGCCAGTTCGACTT CTTGTTCGAGGACTTCCCCGAAGACTGGATCGACCGCATGGGCAGCACCTGGCCGGGGCCGAACACCTGGTTGGTGCCGCACCAGGACCTGTTGCCCGAG TGGGTGACCGGTGAGCATGACACGGTGGCGCTGCGGGTCAGCGACCATCCGGTGGTGCGTGAGTTGTGTGCGTTGGTGGGGCCGTTGATTTCCACTTCGT GCAACCCGGGCGGGCGCCCGGCGGCGAAGACCCGGTTGCGGGTGGAGCAGTACTTCCATGGTCAGCTGGATCTGGTGCTGGGGGGGGCGTTGGGTGGAAG GAAGAACCCTAGTGTGATTCGCAACCTGGCCACTGGCGAAGTCGTTCGCCCGGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACATATCCACAGGCCTGGCCGGGACCTCCTGTGGGAGCGGGCGAGCCCGCGAAGAATCCAACGCGGTGCCTGGCACGGGCTTCGCCCGTGTTCGCGGGC ATGCCCGCTCCCACAGGTCAGGGCCAAGCCCCCGCAGATTTTTCTGATTTTGTTTCGAATGCCTGTCCAGCTAGCGGCTTGGGAAATATCCTACGAGCCG CGTCCCCTGCCATCACCTTCTCAGTGGGAACCTCTGCCCTTAGTCTTCAGCCGTCGCCGAATAACTTGGCGATCGGGTGTGGTAACCCGGGTTCTGGGTG ATCTTGGCAGTCCATGGCGGCTGTTCGCAGGAGGCTTCGTGCCTGCTGGGTTTTAGATCTCCCACCCGGTTTACCACCCTGCGTACAGCTGCCACCTATT CGTGTGGTAACGACTGGGTGGTGCCATGAAGCGAGATCTAGTGATGAAGAAGATTGTCCCCGATCCACCCCTACCCTGCACATCCACCCGCCCCTTCGGC
|
|
| Amino Acid Sequence |
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVADNIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPE WVTGEHDTVALRVSDHPVVRELCALVGPLISTSCNPGGRPAAKTRLRVEQYFHGQLDLVLGGALGGRKNPSVIRNLATGEVVRPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|