Pseudomonas plecoglossicida NyZ12, RK21_RS23035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCTTGCCACCGATGGCGATCGTGATGCTGTGTTCAATGTCTATGAGTCACTGCTGGTGGCTCCGCCCAGCGATGCCGGCGTGATCGTCAGCCTACTGG ACGACCCGAAGGTCCAGGCCCGTGGCTTCGTGCGCGAAATCACTCCCACGGTGTCCGCGCAAAGTGGCACGGTACAGGTAAAGGTCGGGTTGAAAGATGT GCCGCCGGCGATGCAGCTGGGCGCACCGGTGAAAGCCACCACCAATGCCCAAGGCCGGCCAAGTATCGAGCTGCCATGGTCAGCCTTGACCAAGGCGCTG CACGAACCAGCGGTGTGGGTGGTGGGCGAGGGTGACAAGGTAGAACTGCGCAAGGTCGAAGTCAGCCGTTATCTCACCGGCAGGATCGTGGTCGCCAGTG GCTTGAAGGGCGGCGAGACAGTGGTGGTCAATGGCGGGCAGTTGCTGCACCCCGGCATGCAGGTACTGAAGATCGATGCCAAGGCCAAAGGGGGTGAGCT
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| DNA Sequence for Gene |
>RK21_RS23035
ATGAAGCGCCTGCTGCTGATGCTGTCGGCCGGCGTGCTGTTGGCCGGCTGCAGTAGCGAGGATGAAGTGCCGGAGCCGATTCGGCCGGTGCTGTCGGTCA AGGTCGAACCCCAGGTGCAGTCGCAGCTCGGCCGCTTCGCCGGCAGTATCCAGGCACGTTTCGAAAGCACCTTGGGCTTCCGGGTTTCCGGGCGTATTGC CCGGCGCTGGCTGGATGTGGGCGCCCAGGTGAAACCGGGCGATACCCTGGCCACCCTCGACCCGACCGACCAGCAGAACCAGTTGCGTGCCGCCGAAGGC GACCTGGCCAAGGTGCAGGCGCAGTGGATCAACGCCCAGGCCGATGCCCGCCGGCAGCAACAGCTATATGACCGTGGCGTAGGCGCCCAGGCCCAGCTGG ATATCGCCCAGACCAACCTGAAAACCACCAGCGCGGCGTTGGAGCAGGCGCGCTCTGCACTCAGCCAGGCGCGTGACCAGCTCGACTACAGCACCCTGCG CACCGACCACGCCGCGGTAATCACTGCCTGGCAGGCCGAAGCCGGGCAAACCGTCACCGCCGGCCAGGCCGTGGTAACCCTGGCCAGGCCGGATGTGAAG GAAGCGGTGATCGATCTGCCGATCGGCCTGGCCGAGCAGTTGAGCAAAGGCCTGACCTTCACCGTTGCTTCGCAGCTGGACCCGACCATCAACACCACCG CCAGCCTGCGGGAACTGGAACCCCAGGCCGACGCCACCACGCGCACCCGCCGCGCGCGCCTGACCCTGGCGAGCACCCCGGCGGCCTTCCACCTGGGCAC CGCCATCAGCGTGACCCTGAGTTCGGAGGTGTCGCCGCGCAGCGAACTGCCCTTGAGTGCCTTGCTCGAGCGCGACGGCAAGACCCAGGTATGGGTGATC GATACGCAGCAGAAGACCGTGGCCACCCGTGATGTGGCCCTGATCGGTCGAACCGCCGACAGCATCGTCCTGACCTCGGGCGTACAGCCCGGCGAGCGGG TGGTGACTGCGGGCGTGAACAGCCTCAAGCCTGGCCAGAAGGTCACCTTCGACGAGGATGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGAAGCTTCAACCTGTCCGACTGGGCACTCAAGCATCAATCGTTCGTCTGGTACCTGATGTTCGTCGGCCTGCTGATGGGGATCTTTTCCTACTTCAA CCTGGGCCGTGAGGAAGACCCGTCGTTCACCATCAAGACCATGGTCATCCAGACCCGCTGGCCCGGCGCGACCCAGGACGAAACCCTGTACCAGGTCACC GACCGTATCGAGAAGAAGCTCGAGGAACTCGACTCCCTCGACTACACCAAAAGCTACACCCGCCCCGGCGAATCCACGGTCTACGTGTACCTGCGCGACA CCACCAAGGCCAAGGACATCCCGGAAATCTGGTACCAGGTGCGCAAGAAGATCCAGGACATTCGCGGTGAGTTCCCTGCAGGCATCCAGGGGCCCGGGTT CAACGATGAATTCGGCGATGTGTTCGGTTCTATCTATGCCTTCACCGCCGACGGCCTGACCCTGCGCCAGCTGCGCGACTACGTGGAACAGGCGCGGGCC
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| Amino Acid Sequence |
>RND transporter
MKRLLLMLSAGVLLAGCSSEDEVPEPIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEG DLAKVQAQWINAQADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSALSQARDQLDYSTLRTDHAAVITAWQAEAGQTVTAGQAVVTLARPDVK EAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVI DTQQKTVATRDVALIGRTADSIVLTSGVQPGERVVTAGVNSLKPGQKVTFDEDAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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