Pseudomonas plecoglossicida NyZ12, RK21_RS21755

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.930.12
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.930.12
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.930.12
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.930.12
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppj03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 12 82 5.2E-18
Coils Coil Coil - - 170 177 -
FunFam G3DSA:3.90.930.12:FF:000002 50S ribosomal protein L6 - - 1 82 2.9E-29
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 71 96 5.4E-34
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 90 164 2.0E-19
PANTHER PTHR11655 60S/50S RIBOSOMAL PROTEIN L6/L9 IPR000702 Large ribosomal subunit protein uL6-like 1 177 1.1E-48
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 82 5.23E-24
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 82 4.7E-26
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 83 177 4.5E-40
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 83 177 1.61E-36
PIRSF PIRSF002162 RPL6p_RPL6a_RPL9e_RPL9o IPR000702 Large ribosomal subunit protein uL6-like 1 177 1.6E-47
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 141 162 5.4E-34
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 99 115 5.4E-34
Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. IPR019906 Large ribosomal subunit protein uL6, bacterial-type 1 176 38.396797
FunFam G3DSA:3.90.930.12:FF:000001 50S ribosomal protein L6 - - 83 177 9.8E-45
NCBIfam TIGR03654 JCVI: 50S ribosomal protein L6 IPR019906 Large ribosomal subunit protein uL6, bacterial-type 2 176 9.9E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.