Pseudomonas plecoglossicida NyZ12, RK21_RS21275

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2300 - - - 25 153 4.7E-10
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 292 445 1.9E-40
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 157 291 8.11E-30
Gene3D G3DSA:3.40.50.2300 - - - 154 292 3.3E-27
CDD cd00156 REC - - 166 266 3.92197E-22
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 293 451 1.6E-49
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 46 151 8.9E-8
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 115 449 3.2E-87
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 163 276 4.7E-25
SMART SM00267 duf1_3 IPR000160 GGDEF domain 279 450 1.6E-50
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 39 151 0.033
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 47 155 2.85E-10
CDD cd01949 GGDEF IPR000160 GGDEF domain 292 448 5.84969E-59
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 285 450 7.3E-48
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 295 450 1.33E-46
FunFam G3DSA:3.40.50.2300:FF:000346 Diguanylate cyclase response regulator - - 160 288 4.4E-53
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 165 276 2.2E-20
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 287 448 2.0E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.