Pseudomonas plecoglossicida NyZ12, RK21_RS20065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006099 | tricarboxylic acid cycle |
Inferred from Sequence Model
Term mapped from: InterPro:PF06039
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008924 | malate dehydrogenase (quinone) activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF06039
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppj01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj00620 | Pyruvate metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj01200 | Carbon metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj00020 | Citrate cycle (TCA cycle) | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01320 | JCVI: malate dehydrogenase (quinone) | IPR006231 | Malate:quinone-oxidoreductase | 7 | 484 | 0.0 |
| Coils | Coil | Coil | - | - | 365 | 385 | - |
| Gene3D | G3DSA:3.50.50.60 | - | IPR036188 | FAD/NAD(P)-binding domain superfamily | 4 | 252 | 1.2E-7 |
| Pfam | PF06039 | Malate:quinone oxidoreductase (Mqo) | IPR006231 | Malate:quinone-oxidoreductase | 6 | 490 | 0.0 |
| Hamap | MF_00212 | Probable malate:quinone oxidoreductase [mqo]. | IPR006231 | Malate:quinone-oxidoreductase | 3 | 491 | 51.474876 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | IPR036188 | FAD/NAD(P)-binding domain superfamily | 4 | 324 | 1.42E-23 |
| PANTHER | PTHR43104 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL | - | - | 2 | 445 | 5.5E-27 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.