Pseudomonas plecoglossicida NyZ12, RK21_RS15955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0019354 | siroheme biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01469
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008168 | methyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.950.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppj00860 | Porphyrin and chlorophyll metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppj01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.950.10 | - | IPR014776 | Tetrapyrrole methylase, subdomain 2 | 118 | 243 | 5.4E-38 |
| SUPERFAMILY | SSF53790 | Tetrapyrrole methylase | IPR035996 | Tetrapyrrole methylase superfamily | 2 | 235 | 6.54E-69 |
| Gene3D | G3DSA:3.40.1010.10 | - | IPR014777 | Tetrapyrrole methylase, subdomain 1 | 1 | 117 | 1.9E-38 |
| NCBIfam | TIGR01469 | JCVI: uroporphyrinogen-III C-methyltransferase | IPR006366 | Uroporphyrin-III C-methyltransferase | 4 | 234 | 1.6E-89 |
| PANTHER | PTHR45790 | SIROHEME SYNTHASE-RELATED | - | - | 3 | 235 | 1.6E-82 |
| Pfam | PF00590 | Tetrapyrrole (Corrin/Porphyrin) Methylases | IPR000878 | Tetrapyrrole methylase | 4 | 203 | 2.0E-44 |
| FunFam | G3DSA:3.40.1010.10:FF:000001 | Siroheme synthase | - | - | 1 | 117 | 1.3E-44 |
| CDD | cd11642 | SUMT | IPR006366 | Uroporphyrin-III C-methyltransferase | 8 | 233 | 1.89155E-112 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.