Pseudomonas plecoglossicida NyZ12, RK21_RS12010

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF141868	EAL domain-like	IPR035919	EAL domain superfamily	597	841	3.53E-82
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	295	413	1.1E-14
SMART	SM00052	duf2_2	IPR001633	EAL domain	592	834	2.1E-103
NCBIfam	TIGR00254	JCVI: diguanylate cyclase (GGDEF) domain	IPR000160	GGDEF domain	422	580	8.1E-39
CDD	cd01949	GGDEF	IPR000160	GGDEF domain	427	580	4.17245E-58
Gene3D	G3DSA:3.30.70.270	-	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	420	595	1.9E-55
SMART	SM00267	duf1_3	IPR000160	GGDEF domain	415	582	4.3E-65
SUPERFAMILY	SSF55073	Nucleotide cyclase	IPR029787	Nucleotide cyclase	431	583	2.35E-45
Pfam	PF00990	Diguanylate cyclase, GGDEF domain	IPR000160	GGDEF domain	427	577	6.5E-44
CDD	cd01948	EAL	IPR001633	EAL domain	598	834	6.01765E-101
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	294	413	1.52E-14
PANTHER	PTHR44757	DIGUANYLATE CYCLASE DGCP	-	-	279	835	0.0
Pfam	PF05228	CHASE4 domain	IPR007892	CHASE4	65	212	3.0E-13
Gene3D	G3DSA:3.20.20.450	EAL domain	IPR035919	EAL domain superfamily	596	845	7.2E-88
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	300	419	6.5E-7
Pfam	PF00563	EAL domain	IPR001633	EAL domain	598	829	2.1E-64
SMART	SM00091	pas_2	IPR000014	PAS domain	303	368	0.0013

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.