Pseudomonas plecoglossicida NyZ12, RK21_RS08755

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details]
DNA Sequence Upstream of Gene
GTCCATATCACCTACGACGTGGACATCGGCGATGCCATCGAGAAAAAGGAGCTGCCCTTCGTCGTCGGCGTACTGGGCGACTTTTCCGGCAACCCGCTGG AGCCGCTGCCCAAACTCAAGGACCGCAAGTTCGTCTACATCGACCGCGACAACTTCAACGGCGTGCTCAAGGGCATCAAGCCGCGCCTGACCTACCGCGT CGACAACACCCTGGCCAAGAACGGCACCCAGCTGGGCGTGGAACTGAACTTCAACAGCCTCGAAGACTTCGAGCCACAGAACGTGGTCAAGCAGGTCGAA CCGCTGCGCAAACTGCTGGAAGTGCGCAACAAGCTGGCCGACCTGCGTAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGC AGAACACCGAGAAGCTCAAGACCCTGGGCAAGGAATTCGGCCGTGAAGCCGAAGTGAAAGACCCATCCAGCAGCGATCGCGCCTGAGCAGGAGCCCGAAC
DNA Sequence for Gene
>RK21_RS08755
ATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGACCTGGTCGAAGTGGAAAACTTCGCGCCACAGGCATCGTTGCTCGACAGCATCATTTCGCAAA GCCGCGTGGCCCGCTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAACTGGTGAACCAGGTGCTCGAGGGCGAGATGACCCCGAGCAAGGA CCTGATCGCCGTGCTCGATTCGCGTATCGCCGAAATCGACGCGATGCTTTCCGAGCAGATGAACGAAATCATGCACGCTCGTGAGTTCCAGCAGCTGGAA GCCTCCTGGCGCGGCCTGAAATACCAGGTAGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAATGCCTCGAAGAAAGACCTGGTACGCG ACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCACTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCGCCTTTCGGCATGCTGAT CGGTGACTACGAGTTCAACCGCAACCCCGAAGACATGTACCTGCTGGAGGAGATCTCGCACGTCGCCGCGGCCGCCCATGCCCCGTTCATTTCGGCCGCC TCCCCCGAGCTGTTCGGCTGGGACTCGTTCACCGAAATGTCCGGCCCGCGTGACCTGGCAAAGATCTTCGACACCGTCGAATACGCCAAGTGGAAGTCGT TCCGCGCCTCGGAAGACTCGCGCTACGTCGGTCTCACCCTGCCGCACGTGCTCGGTCGCCTGCCGTATGGCCCCGATACCACCCCGGTGGAGGAATTCAA CTTCGTCGAAAGCGTCGATGGCCGCGACCACAACAAGTACCTGTGGATGAACGCTGCCTACGCCCTCGGCACCCGCGTTACCGATGCCTTCGCCCGCTAC GGCTGGTGCGTGGCCATCCGCGGCGTGGAAGGTGGCGGCCTGGTCGAAGGTTTGCCAACCCATACCTTCAAGACCGACGACGGCGAAATCGCCCTCAAGT GCCCGACCGAAATCGCCATCACCGACCGCCGCGAAAAAGAGCTGTCGGACCTGGGCTTCATCCCTCTGGTGCACTGCAAGGGCACCGACTATGCCGCGTT CTTCGGCACCCAGTCGGCGCAGAAGCAGAAGCAGTACAACACTGACATTGCCAACGCCAACGCGCGCCTGTCGGCCCAGCTGCAGTACATCTTCGCCACT TCGCGCATCGCCCACTACATGAAGGCCATCATGCGCGACAAGATCGGCAGCTTCGCCTCGCGCATGGATGTCGAGCGCTTCCTCAACCAATGGCTGGCCA GCTACGTGCTGCTCGACGACACCGCCAGCCAGGAAGCCAAGGCCAAGTTCCCGCTGCGCGAAGCCCGCGCCGAGGTGTTCGAAGTGCCGGGCAAGCCAGG TGTGTACAAGGCCGTGACCTACCTGCGCCCGCACTACCAACTGGATGAGCTGACCGCTTCGCTGCGCCTGGTTGCCGAGCTACCACAGGGCGCGCGCGGC TGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CAGGCCGGTGTGTACAGGGATGACACATGAGTAACCAGGCCCGCCTGCTGCCCTCGCTGCTCGACCGACTGCTGGACGACCGTCCGTACCAGTCGGCCGA GCCAGCCGTGCAACGCACCTGCTCGTTGAGCGAGTACAAGGCCAGCATCGTCCGTGACCTGGAGGTACTGGTGAACACTCGCCAGAGCCTGGTCGCCGAA GAGCTGGAGGGCTACAGCCAGCTCGGTGGTTCCATCCTCGAATACGGCATGCCCGACTTCATCAGCCGCAGCGTGCTCGACCCGCATGATCGGCGCCTGA TCCAGCAGCAACTGGAACGGGCGATCAGCACAGGGGACCGACGTTTTCGCCGTGTCCGCGTGCAGCTGCTGGCCCAGCAGAACGGCCACCGTATGTTGAC CTTCCGCGTGGACGCCGTGTTGCGTCTGCAGGACATCAGCCGCCAGGTGTCATTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAAC
Amino Acid Sequence
>type VI secretion protein EvpB
MTDKQTAPQQAGDLVEVENFAPQASLLDSIISQSRVARSDTERNRTRDLIGELVNQVLEGEMTPSKDLIAVLDSRIAEIDAMLSEQMNEIMHAREFQQLE ASWRGLKYQVDQTETSTTLKIHLLNASKKDLVRDLKAASEFDQSALFKKVYEEEYGTFGGAPFGMLIGDYEFNRNPEDMYLLEEISHVAAAAHAPFISAA SPELFGWDSFTEMSGPRDLAKIFDTVEYAKWKSFRASEDSRYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFARY GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSAQKQKQYNTDIANANARLSAQLQYIFAT SRIAHYMKAIMRDKIGSFASRMDVERFLNQWLASYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQLDELTASLRLVAELPQGARG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site