Pseudomonas plecoglossicida NyZ12, RK21_RS08590

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF48150	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006284	base-excision repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00478	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003824	catalytic activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF48150	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppj03410	Base excision repair	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM01009	AlkA_N_2	IPR010316	DNA-3-methyladenine glycosylase AlkA, N-terminal	8	124	5.2E-43
SMART	SM00478	endo3end	IPR003265	HhH-GPD domain	134	289	5.4E-5
SUPERFAMILY	SSF55945	TATA-box binding protein-like	-	-	8	105	2.2E-24
PANTHER	PTHR43003	DNA-3-METHYLADENINE GLYCOSYLASE	-	-	78	291	9.1E-30
Gene3D	G3DSA:1.10.1670.10	-	IPR023170	Helix-hairpin-helix, base-excision DNA repair, C-terminal	242	291	7.8E-9
Gene3D	G3DSA:1.10.340.30	Hypothetical protein; domain 2	-	-	127	239	1.8E-19
SUPERFAMILY	SSF48150	DNA-glycosylase	IPR011257	DNA glycosylase	113	287	1.01E-31
Pfam	PF06029	AlkA N-terminal domain	IPR010316	DNA-3-methyladenine glycosylase AlkA, N-terminal	8	124	1.0E-32
Gene3D	G3DSA:3.30.310.20	-	IPR037046	DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily	9	124	3.3E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.