Pseudomonas plecoglossicida NyZ12, RK21_RS08465

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details]
DNA Sequence Upstream of Gene
GCCAGATGAACTTCGTCGACAACCAGGTCAACCCGCGCACCGGCACCATCCGTGGCCGTGCGGTGTTCGACAACAGCGACGGCCAGTTCACCCCAGGCCT GTATGCACGCCTGAAGCTGGTGGGCAGCGCACAGTACCAGGCCGTGCTGATCAACGACGAAGCCGTGGGCACCGACCTTGGCAAGAAGTTCGTGCTGGTC ATGGACAAGGACAACAAGGCCGCCTACCGCGCCGTGGAGCTGGGGCCGAAGCTGGAAGGCCTGCGCATCGTGCGCAGCGGCCTGGGCAAGGACGACCGCA TCGTGGTCAAGGGCCTGCAGCGTGTGCGCCCTGGCTCACCGGTCACCCCGGAAGAGACACCGATGGCCAGCGAACAGACCCTCGCCGCCCTCGCCCAGCA GCGCCAGGCCCTGGAGGCCAGCAACCCGGCGCCGAAGGTGGCGGGCAACAACGTGAAAGTCGCCAGCGCCCAGGCGCCACGCGGTTAAGGGACCACACCG
DNA Sequence for Gene
>RK21_RS08465
ATGAACTTCTCGAAATTCTTCATTACCCGGCCAATTTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCGATCTCGCTGTTCCAGCTGCCGA TCAGCGAATACCCCGAAGTGGTGCCGCCCACCGTGGTGGTGCGCGCCAACTTCCCCGGCGCCAACCCCAAGGTCATCGGCGAAACCGTCGCCGCGCCACT GGAGCAGGCGATTACCGGCGTGGAGAACATGCTGTACATGTCCTCCCAGTCCACCGCTGACGGCAAGCTGACGCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCCCAGGTGCAGGTGCAGAACCGCGTCACCCGTACCCAGCCCAAGCTGCCAGAGGAAGTGACCCGCATCGGTATCACGGTCGACAAGG CCTCGCCCGACCTGACCATGGTCGTGCACCTGACCTCGCCGGATAACCGCTACGACATGCTCTACCTGTCCAACTACGCCATCCTCAACATCAAGGATGA GCTGGCGCGCCTGGGCGGCGTGGGCGATGTGCAGCTGTTCGGCATGGGCGACTACTCGCTGCGCGTGTGGCTGGACCCGAACAAGACCGCTTCGCGCAAC CTCACCGCCAGTGATGTGGTGGCTGCGATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCCCCACCCGCCCCGGGTTCGACCAGCTTCC AGCTGTCGATCAACACCCAGGGTCGCCTGGTGAATGAGGAAGAGTTCGAGAACATCATCATCCGCGCCGGTGCCGATGGCGAAATCACCCGCCTGAAGGA CATCGCCCGGGTCGAACTCGGTTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCCGGCGGTGGCCATTCCGATCTTCCAGCGCCCAGGCTCC AACGCCATCGAGATCTCCGACGAAGTGCGGGCGAAGATGGCCGAGCTGAAGAAGGACTTCCCCGAGGGCATGGACTACAGCATCGTCTATGACCCGACCG TGTTCGTCCGTGGTTCCATCGAAGCCGTGGTACACACCCTGTTCGAAGCGCTGGTGCTGGTGGTGCTGGTCGTCATCCTGTTCCTGCAGACCTGGCGTGC CTCGATCATCCCGCTGATGGCCGTGCCGGTATCGCTGATCGGTACCTTTGCCGTGATGCACCTGTTCGGCTTCTCGCTCAACGCGCTGTCATTGTTCGGC CTGGTCCTGGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAGCGCAACATCGGCCTGGGCCTGAAACCGCTGGAAGCCACGC AAAAGGCCATGGGCGAAGTGACCGGGCCGATCATCGCCACCGCCCTGGTGCTGTGCGCGGTGTTCGTACCTGCTGCGTTCATTTCCGGCCTGACCGGGCA GTTCTACAAGCAGTTCGCTCTGACCATCGCCATTTCCACGGTCATCTCGGCATTCAACTCGCTGACCCTGTCGCCGGCCCTGGCAGCCGTGCTGCTGAAG GACCACCATGCGCCCAAGGACCGTTTCTCGCGGTTCCTGGAAAAACTGCTGGGCAGCTGGCTGTTCGCCCCGTTCAACCGCTTCTTCGACCGCGCTTCCA ACCGCTACGTCGGCGGCGTGCGTCGGGTCATCCGCTCCAGCGGCATCGCCCTGTTCGTGTATGCCGGCCTGATGGGCCTGACCTACCTCGGCTTCTCGTC CACCCCGACCGGTTTCGTGCCGGCCCAGGACAAGCAGTACCTGGTGGCGTTCGCCCAGCTGCCTGACGCGGCCAGCCTCGACCGCACCGAAGCGGTGATC AAGCGCATGAGCGAAATCGCCCTGAAGCAGCCTGGCGTGGCCGACTCGGTAGCCTTCCCTGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAACAGCG GCATCGTGTTCACCCCGCTCAAGCCGTTCGACGAGCGCAAGGACCCGAGCCAGTCGGCGGCGGCCATCGCGGCTGCACTGAATGCCCAGTTCGCCGACAT CCAGAACGCCTACATCGCGATCTTCCCGCCACCGCCGGTACAAGGCCTGGGCACCATCGGCGGCTTCCGTCTGCAGATCGAAGACCGTGGCAACCTGGGC TACGAGGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTGCCGGAACTGGCGGGCCTTTTCACCAGCTACCAGGTCAACGTGCCCC AGGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGCGTGGCGATCACCGACATCTTCGACACCCTGCAGGTCTACCTGGGCTCGCTGTACAC CAACGACTTCAACCGCTTTGGCCGTACCTATCAGGTCAACGTCCAGGCCGAGCAGCAGTTCCGCCTCGATGCCGAGCAGATCGGCCAGCTGAAGGTGCGC AACAACCTCGGCGAGATGATCCCGCTGGCGACCTTCCTCAAGGTCAGCGACACCTCCGGGCCTGACCGGGTGATGCACTACAACGGTTTCATCACCGCCG AGATCAACGGCGCCGCGGCACCGGGCTACAGCTCCGGCCAGGCCGAAGCTGCCATCGAGAAGCTGCTGAAGGAGGAACTGCCCAACGGCATGACCTTCGA GTGGACCGACCTGACCTACCAGCAGATCCTTTCGGGCAATACCGCGCTGTTCGTGTTCCCGCTGTGCGTGCTGCTGGCCTTCCTGGTGCTTGCCGCCCAG TACGAAAGCTGGAGCCTGCCGCTGGCAGTGATCCTGATCGTGCCTATGACCCTGTTGTCGGCCATCACCGGGGTGATCGTGTCGGGGGGTGACAACAACA TCTTCACCCAGATCGGTCTGATCGTACTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAAGGACGAACAGGCCAAGGGGCTCGA CCCGCTGGCTGCGGTACTGGAAGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACCTCGATCGCTTTCATCATGGGTGTGGTTCCACTGGTGTTCAGC TCCGGTGCCGGTTCTGAAATGCGCCATGCCATGGGCGTGGCGGTGTTCTCGGGAATGATCGGGGTTACCGTGTTCGGCCTGTTCCTGACCCCGGTGTTCT TCTTCCTGATTCGCCGTTTCGTCGAGCGTCGCCAGGCCCGCAAGGCCGAACGCGCCCAATCGCTGGAGAGCCATGCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCTGCTCAAACCCTTGACCCCGAGCTTGCTGGCGCTCGCCTTGTCGGCCTGTGCAGTAGGCCCGGACTACCAGGCGCCAGCCACCGAGCCCGCGCAGCT GGCCAGCGACATACAGACCAAGGCCTACGACCGTAGCCGTTTCGAAAGCCTGTGGTGGAAGCAGTTCGACGACCCGGTGCTGAACCAGCTGGTGCAGGCT TCGCTGGATGGCAACCGTGACCTGCGCGTGGCCTTCGCCCGCCTGAAGTCGGCCCGTTCGATCCGTGAAGACGCCGAGAACGATCAGTTTCCGGTGGTCA CCAGCCGCGCCAGCAGCGACATCGGCAAGGGCCAGATCCCCGGCCAGACCACGCAGCGGGTAAACAGTGAGCGCTACGACCTGGGCCTGGACATGGCCTG GGAGCTTGACCTGTTCGGCCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCAGCAGCCGCGGCCGACCTGCAGCAGCTGCAGGTCAGCCTG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTVFVRGSIEAVVHTLFEALVLVVLVVILFLQTWRASIIPLMAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK DHHAPKDRFSRFLEKLLGSWLFAPFNRFFDRASNRYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAALNAQFADIQNAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLG YEALYKETQNIIAKSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQIGQLKVR NNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFS SGAGSEMRHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQARKAERAQSLESHA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site