Pseudomonas plecoglossicida NyZ12, RK21_RS07615

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details]
DNA Sequence Upstream of Gene
AGGTCGCGCTGGATGCTGGCGAGGTGTGCTTGCGCCTGGTCGATCAGGCTTGCCGGGTATCGGTGCTCAAGGGCACGGCCAACCTGCAGCCGCGGCAAGG CCCGGCGCTGCTGCTGCAGGCCGGGCAGCAGGCCAGCCTGCAAGTGGCCGGGGTTGGCCCTGTCACCGGCCTGGACGCATGGCTGCTGGGCTGGCGCGAA GGGGTACTGCGGCTGGAGGATCGCCCCTTGGGCGAGCTGCTGCACGAGCTGCGCAGGTACCGCCCCGGCGTGCTGCGCTGGGCGCCCGAACTGGAGGCCC TGCGCGTGACCGGTACGTTCCGCCTCGACGACACCGACCGGGTGCTGGCCTTGCTCGCCGCCAGTCTGCCGTTGCAGGTGCACACGCGCACGCGTTACTG GGTGAGCCTGGCCGCGCGGGAAAATCGCGCATGAGGCTGTCCCCTTTTTTTCGCTCACCGGTCATTACCGGTAGGAGCAAATAAAGGGGAGCCTTGTTCA
DNA Sequence for Gene
>RK21_RS07615
ATGCCTGTTGTCATGTCCAGCCGCCTGCGCCCACTGGCGCGTGCGGCACATCCGTTGTTCGCCATGAGCCTGTTGTTGTGTGCACCGGCCTGGGCCGAAG AACCCGCCCGGCGCAGCTATCAGGTGCCGCCTGCAAACCTTGGTGCGGCACTTACCCAGTTTGCCGATCAGGCCGGGGTCAGCCTGTCGCTGGACCCGGC GCTGGTCAACGGCCGGCAGAGCAATGGCCTGTCCGGCAGCTACAGCGTCGACGAAGGCTTCACCCAGCTGTTGCGCGGCAGCGGCCTGCAGCTGCTGCCG GTGGGCGAGGGCGCTTTCACATTGATGCCGGCACCCCAGGCGGGTGGTGCGCTTGAAATCGCCCCGACCAGCATCGTCGGTGGCCTGGCCGCAGGCAACG AAACGCAACCTTATGCCGGTGGCCAGGTGGCCCGTCAGGGTTCACAGGGCCTGCTCGGCACGCGCGACTTCATGGAAACCCCGTTCAGCATCACCAGCTA CACCAGCGAACTGGTGAAGAACCAGCAGGCGCGAACCTTGGGCGAGCTGATCGCCAGCGACCCATCGGTACGCGCCACCAACCCGGCGGGTGGGCGCTTC GAGCAGTTCACCATTCGCGGCTTCAGCCTGTTCAACAGTGATGTGGCCTACAACGGCCTGTACGGCATCCTGCCGACCTACTCGATCGACATGGAAATGG CCGACCGGGTCGACATCATCAAAGGCCCCAGCCAACTGATCAACGGCATTTCGCCGCGAGGCAGTGTCGGCGGCGGCATCAATGTGCAGCCCAAGCGAGC CGGCGACCAGCCGCTCACCGAGTTTACCGGCAGCTATGCCTCGGCCGGCCAGGCAGGCGGTGCGGTGGACGTTGGCCGGCGCTTTGGCGAAGGCCAGCAG TTCGGCGTGCGCTTCAATGGCGTGAAACAGGCGGGCGATACCGAATGGGACCACCAGCGAGTCGAACGTGAAATGGCGGTGTTGGGCCTGGACTTTCGTG GCGAGCGCCTGCGGCTTTCGGCGGACCTTGGCCATACCGAGCGCGATACCGATGCACCGCAGGAGCGGGTGCTGGTCGGTGCCAATGCCAAGGTGCCGGA TGCCAACGACGTACGCCACAACTACGCCCAGGCCTGGAGCAAGGCGCGCACCAACGACACCTTCGGTGCGCTGCATGCCGAGTACGATATCAGCGAGTCG CTGCTGGCCTATGGCGCGGTCGGCGCGCGCAAGAGCAACCATGACTTCCTGCGCCACAACGTGTCCATCAGCAACGATGCCGGCGACTTCACCGTGCAGC CGCGCGACTTCACCCGGGATGAAAGCGTGCGTACCGCCATGGCCGGCGTGCGCAACTGGTTCCATACCGGGCCGGTCAGCCACGAGCTGAACCTGGCCGC CACCTACTTCTACATGGACTTCACCAACGGCGGCGCCCGCTATGCCTCGGCGCCCAGCAACCTCTACCACCCGGTGGCCACGCCGACACCGGGCACGCCA ACCCGCATCGACCCCGAGGTGTACACGGAAAACCGCTTTTCCGGCGTGGCCCTGGCCGACACCCTGGGCTTCTTCGACGACCGCCTGCTGCTGACCCTGG GCGCGCGTTGGCAGCGGGTGCAGGTGGATGACTGGAGCGACGGCATCAAGGGGGATACCGCCTACGATGAAGAGAAGATGTCGCCCTCGGGCGGCGTGCT GCTCAAGGTTACCGACCAGCTGTCGTTGTATGCCAACTACATGGAGGGCCTGAGCCAGGGCAAGATTGCGCCGTCGACATCGGTCAACGAAGACCAGATC TTCCCGCCGTTCACCAGCCGCCAGGTCGAGGTGGGGGCCAAGTACGACCTGGGCCAGGTCGCCTTTACCGCCAGTGCCTTCCGCATCCGCCAGCCCGCCT ATGAAACCAACCCCACATCGCGGGTGTTCGGCCCCAATGGCAAGCGCGACAACCGCGGTATCGAACTGAGCGTGTTTGGCGAGCCCGTGCAAGGCGTGCG TGTGCTGGGCGGGGTGATGTATATCGACAGCGAACTGACCGACACCATCGGTGGCGCCTACGATGGCAACCGCGCGCCGGCCACGCCCGAGTACAACGTC AACCTGGGCGCAGAATGGGATGTGCCTGGGGTGAACGGCCTGACCCTGACGGCGCGGGGCATCCACTCGAGCTCGCAGTACCTGGACCAGAACAACAGCA AGCAGATCGACGGTTGGGAGCGTTACGACGTGGGTGCGCGTTATGCGTTCAAGGTGGATGCCACTCAGGTGACCTTGCGTGCCAGTGTCGAGAATGTGCT GGACGACCGCTACTGGAGCTCGGCCGGAGCTTCGGATGACAGCGAGCCGGGGCTGACGCTGTCTACGCCGCGTACCTACCTGCTGTCGGCGACAGTGGGT TTCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCATTTCAAAAGTGGGCGCGTTCCCTGTAGGAGCGGCCTTGTGTCGCGAAAGGGCTGCAAAGCAGCCCCAGCAATTTCAAGTGTTGCGCATCAATCCTG GGGCCGCGTTGCGGCCCTTTCGCGACACAAGGCCGCTCCTACAGGTTGAACCGATCGATCAGACCGAATCTGGCACCACGGCGATCACATCGATCTCCAT CAGCCACTCGGCCTGGGCCAACCCGGCCACCACCAGACCGGTGGAAATCGGGAACACACCCTTGAGCCACTTGCCTACCTCCTTGTACACCGGCTCGCGG AAGCGCGGGTCGGTGATGTAGGTGGTGGTCTTGACGATGTGCGACAGGTCCGAGCCGGCTTCTTCGAGCAGTTGCTTGACGTTCTTCATTGCCTGCTCGG CCTGCGCCCGAGGGTCACCCAGGCCCACCAGGTTGCCTTCGAAGTCGGTGCCGACCTGGCCGCGCACGTAGATGGTGTTGCCGGCGCGCACCGCCTGGCA
Amino Acid Sequence
>TonB-dependent receptor
MPVVMSSRLRPLARAAHPLFAMSLLLCAPAWAEEPARRSYQVPPANLGAALTQFADQAGVSLSLDPALVNGRQSNGLSGSYSVDEGFTQLLRGSGLQLLP VGEGAFTLMPAPQAGGALEIAPTSIVGGLAAGNETQPYAGGQVARQGSQGLLGTRDFMETPFSITSYTSELVKNQQARTLGELIASDPSVRATNPAGGRF EQFTIRGFSLFNSDVAYNGLYGILPTYSIDMEMADRVDIIKGPSQLINGISPRGSVGGGINVQPKRAGDQPLTEFTGSYASAGQAGGAVDVGRRFGEGQQ FGVRFNGVKQAGDTEWDHQRVEREMAVLGLDFRGERLRLSADLGHTERDTDAPQERVLVGANAKVPDANDVRHNYAQAWSKARTNDTFGALHAEYDISES LLAYGAVGARKSNHDFLRHNVSISNDAGDFTVQPRDFTRDESVRTAMAGVRNWFHTGPVSHELNLAATYFYMDFTNGGARYASAPSNLYHPVATPTPGTP TRIDPEVYTENRFSGVALADTLGFFDDRLLLTLGARWQRVQVDDWSDGIKGDTAYDEEKMSPSGGVLLKVTDQLSLYANYMEGLSQGKIAPSTSVNEDQI FPPFTSRQVEVGAKYDLGQVAFTASAFRIRQPAYETNPTSRVFGPNGKRDNRGIELSVFGEPVQGVRVLGGVMYIDSELTDTIGGAYDGNRAPATPEYNV NLGAEWDVPGVNGLTLTARGIHSSSQYLDQNNSKQIDGWERYDVGARYAFKVDATQVTLRASVENVLDDRYWSSAGASDDSEPGLTLSTPRTYLLSATVG F
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site