Pseudomonas plecoglossicida NyZ12, RK21_RS04025

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details]
DNA Sequence Upstream of Gene
CGCCGTCAAGCCCGGCGTGTTCGACCTGGACGACATCGACCACTTCAGCACCCGCGCGGTGAGCTTCTTCCTCGGCCTGCCGGGTCCGCGTCATCCGAAG CAGGCCTTCGACGTGATGGTGGCTGCGGCGCGCAAGCTGGCGCACGAACTGAACGGTGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACCA TCGAGCACTATCGCCAGCGCATCGTCGAGTTCGAGCGCCGTGCGCTGACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTCAGGGCGTGCTGGT CGGTTCGGGTGTTGTTATCGACTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGACACCACAGCCCTTGAGGTTTGTGGTGCCCCTGTAGGAG CGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATAAATACCTCAAACCCCCGGCACCACCCCCAGGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCCC
DNA Sequence for Gene
>RK21_RS04025
ATGACCGCCGAAACCCGTATCCACGAACTGCGTGCCGAGCTCGACCAGCACAACTACCGCTACTACGTGCTCGATGAGCCAAGCGTGCCCGATGCCGAAT ACGACCGCCTGTTCAACGAGCTCAAGGCGCTTGAAGCCGAATACCCACACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTCGGTGGCGCAGCCCTGGC CGCGTTCAGCCAGGTCCGCCACGAAGTGCCCATGCTCAGCCTCGGCAACGCTTTCGAAGAAGCCGACCTGCGTGAGTTCGGCCGCCGCGTGGTAGACGGC CTCGACCAGCCCGGTGCGGTCGACTACAGCTGCGAGCCCAAGCTCGACGGCCTGGCCGTGAGCTTGCTGTACCGCGACGGTCTGCTCGTACAGGGCGCCA CCCGTGGCGACGGCACCACCGGCGAAGACATCAGTGCCAACGTACGCACCGTGCGCAACATCCCGCTCAGGCTGCAAGGCGAGGGATGGCCTGCGGTGCT GGAGGTGCGCGGCGAGGTGTACATGAGCAAGGCCGGTTTCGACCGGCTCAACGCCGCCCAGGCCGAAGCCGGCGGCAAGACCTTCGCCAACCCGCGCAAC GCCGCAGCCGGCAGCCTGCGTCAGCTGGACTCGAAAATCACCGCCAGCCGCCCGTTGGAGTTCTGCTGCTATGGCGTCGGCCAGGTGTCTGCGAGCATTG GCGACAGCCACATCGGCATCCTCGAACAGCTCAAGGCGTGGGGGTTGCCGATCAGCCGCGAACTCAAGCATGCCGCCGGTATCGAAGAATGCCTGGCCTA CTACCGCGACATCGGCGAGCGACGCAACAGCCTGCCCTACGAAATCGACGGCGTGGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAACTGGGCTTC CGTGCCCGTGAGCCCCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTCGGCCGCACCGGTG CGGTAACGCCCGTGGCACGCCTGAAGCCGGTCAAGGTGGCCGGTGTGACCGTGTCCAACGCCACCCTGCACAACATGGACGAAATCGCCCGCCTGGGCCT GCGCATTGGCGACACGGTGATCATCCGCCGCGCCGGTGACGTGATTCCGCAGGTGATGCAGGTGGTGCTGGAGCGCCGCCCGGAAGATGCGCGCCCGGTG CAGGTGCCGAGTGAGTGCCCGGTATGCGGCTCGCAGGTCGAGCGTACCCAGTTGGTCAAGCGTAGCAAGGGCAAGGAAACCACCAGCGAGGGGGCGGTGT ACCGCTGCGTCGGTCGCCTGGCCTGTGGCGCCCAGCTCAAGCAGGCGATCATCCACTACGTGTCACGCCGCGCCATGGACATCGATGGCCTGGGCGAGAA GAGCGTCGAGCAACTGGTGGACGAAGGCCTGATCGGTTCGCCGGCCGACCTGTACAAGCTGGAATTCGACCAGATCGTCGGCCTGGAAGGCTTTGCCGAA GTGTCCAGCAAGAAGCTGCTGGATGCCATCGAAGCCAGCAAGCGCCCGGGCCTGGCACGTTTCATCTATGCCCTGGGCATCCCGGACGTAGGCGAGGAGA CCGCCAAGGTGCTGGCCCGCTCGCTGGGCAGCCTGGCGCGGGTGCAGCAGGCGCTGCCGCAGGTGCTCACCTACCTGCCGGACATCGGCCTGGAGGTGGC GTACGAGATCCACAACTTCTTCGAGGACGAGCACAACCGCAAGGTCATCAAGCAGTTGCTCGACAGCGGCATGCAACTGCAGGACGAAGGCGAGCTGGCT GCCGAGTTCGCCGCCAGCACCACCCTGGCCGGCATGATCGCCAAGCTCGACATCGCCTCGGTTGGCCCGACCGGTGCCGAGAAGCTGGTGGCCAAGCTAG ACAGCCTGGACAAGATCATCGCCGCCGATGGTATCGACCTGCGCCAGGCCCTGGCGGCCAAGCAGGCCGAAGCCGTGCGCGAGTTCTTCAAGGATGAAGC CAACCAGAAGCTGGCCCGGGACATCGAGGCACAGTTGCTGGCGTTCGGCATGCACTGGAGCAGCGAGAAGAAAGTGGCCGAAGGCTTGCCGCTGGCCGGC CAGACCTGGGTGCTGACCGGCACCCTGGAGCGCATGAGCCGTGATATCGCCAAGGAAAAGCTGGAAAGCCTGGGGGCCAAGGTGGCGGGTTCGGTATCCG GCAAGACCCACTGCGTGGTGGCGGGGCCGGGTGCGGGGTCCAAGCTGGCCAAGGCCAGTGAGTTGGGCGTGAAGGTGCTTGATGAAGATGCCTTCGTCAC CTTCCTGGGCGAACAGGGCATCGCTGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCCCTGCGCAATCCCCTGTGGCTTGCGCGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCATCCATCGCGGCGCCTGCTTCG CGGCGGTTCGACGCCTCGACACGCCCGCTCCCACAAGTCCTGCGCTGGTCTTGCTGTCAGCGCTAACCCTGTAGGAGCGGGTTCACCCGCGAATTGCCAG CTCCAGGCCACCCCGACCTGGACAAGTCATTGAGAAATGATGACTTTTTCTCCTCCAGAGGTTGTATCTGCCCCCAAGACCGGTACAATGGCGCCACTCG CTGTTCAGCGAGCCTTGTAGTGGTGGCCCCATCGGTCCCCCCGCATTGATTACCCGTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACAT CGAGTGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTCAGGTCCTTGAATTTTCAAGGATTTCTCGCCCTAAAATCTCGAAGTGTGACAGCGTTTAGGTA
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEYPHLVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDG LDQPGAVDYSCEPKLDGLAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGDSHIGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPV QVPSECPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLEFDQIVGLEGFAE VSSKKLLDAIEASKRPGLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQAEAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAG QTWVLTGTLERMSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLGEQGIAV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site