Pseudomonas plecoglossicida NyZ12, RK21_RS03645 (flhF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAGGTGCTGCAGGCGCTGTTGTCGGAACAGGTGCCCGTACGCGATATCCGCAGTATCGCCGAGGCGATCGCTAACAACGCCGGCAAGAGTCAAGATACCG CCGCGCTGGTGGCGGCGGTGCGCGTCGGATTGTGTCGCGCCATCGTGCAAAGCATTGTCGGCGTTGAGTCGGAGCTGCCAGTGATTACCCTGGAGCCAAG GTTGGAACAGATTTTGCTCAATAGTCTGCAAAGGGCCGGGCAAGGTCAGGAAGACGGTGTTCTTCTGGAACCGAGCATGGCCGAGAAGCTGCAGCGTTCG TTGATCGAGGCGGCCCAGCGCCAGGAAATGCAGGGCCAACCGGCCATCCTCCTGGTCGCCGGCCCGATCCGCGCCATGCTGTCGCGTTTCGGTCGTCTGG CTGTACCGAATTTGCATGTTCTGGCGTATCAGGAAATACCGGACAACAAGCAAGTCACCATCGTTGCCACCGTGGGCCCTAACGGCTGAGGTAGGGGATA
|
|
| DNA Sequence for Gene |
>RK21_RS03645
|flhF
ATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAGGCCATGAAGCTGGTCCGTGATGAGCTGGGCGCCGATGCCGCCATCATCGGCAACCGTCGCA TCGCCGGCGGTGTCGAACTGACGGCCGCGCTGGACTACAAGCTGTCTGCCCTGGCCCCGCGTGTGCCCAACGCCGAACTGGAAGAAGAGCTGCGCAAGAC CCATACGCGCATCGCCACTGCCCAGGCCGAACTGGATCATCGTCAGGACAGCAGCGACAACAACCGCCAATTGTTCGCCGGGCAGTCGCTGACCGCCGCC GAGCCGTTGGTCGAACCGCACATCGATGCGCCCGAGGCCGCTGCGCCAGCCCCTGCGTCGGCGCCGGTCGATCCGCGCCTGTTCGATGCCATGCGCTCCG AGCTTTCGGGCCTGCGCGAGCTGCTGGAAGTGCAGCTCGGCTCGCTGGCCTGGAACCAGCTGCAAGGCAGCAAGCCGCAGCAGGCCACCGTCTGGCGCCG GCTGCAGCGCATCGGTCTGTCCGGGCCGATCGCCCGTGAGCTGCTGGACCTGACCGCCGAGATCGACGAGCCACGTCAGGCCTGGCGCATGTTGCTGGCG CATCTGGCGCGGATGATCGAAATCCCCGAGGTCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCCGGCATGGGCAAGACCACCACCC TGGCCAAGCTGGCCGCCCGCTACGTGCTCAAGTACGGCGCGCAGAACCTGGCGCTGGTGAGCATGGACAGCTTCCGCATCGGCGCCCAGGAGCAGCTCAA GACCCTGGGCCGCATCCTTAACGTGCCTGTGACCTACGTCGACCCGGGCCAGTCGCTGGCCGCGGCGCTGGAGCCGCTGCTGCGCAAGCGCGTGGTGCTG ATCGATACCGCTGGCCTGCAGGCCAGTGACCCGGCCCTGCGCATGCAACTTGAAACCCTGGCCGGGCGTGGCATTGCCGCGAAGAACTACCTGGTGCTGG CCACCACCAGCCAGAAGCAGGTGCTGACTGCTGCCTACCACAGCTACAAGCGCTGCGGCCTGGCTGGTTGCATCCTGACCAAACTCGATGAAACGGCGAG CCTTGGCGATGTGCTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTACCTGACCGATGGGCCGCGCATTCCTGACGACCTGCACCTGCCTCGGGGG CACCAGTTGGTCACCCGCGCGGTCAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCCGACATGTTCGCTGATCTCTATCACAACCCACGGC GAGCGGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGATGAAGTGTGTGCAAGGTAGCTATGCCAAAGGGTACGCAGAATTGCCCTACGTGTGGCCTGAGTCCCAGCGAGACAAGGTAAAGAACAGACATGGGTA GCATGCATCCCGTACAGGTGATCGCCGTGACCGGTGGCAAAGGTGGCGTCGGCAAGACTAACGTTTCAGTGAACCTGTCCCTGGCGCTGGCCGAGCTTGG CCGCAGGGTCATGCTGCTCGACGCCGACCTGGGCCTGGCCAATGTCGACGTGCTGCTGGGCCTTACCCCCAAGCGGACCCTGGCCGATGTCATCGAAGGG CGCTGCGAATTGCGCGACGTGATGTTGCAGGGCCCCGGTGGTGTGCGCATCGTACCGGCTGCCTCGGGCACGCAGAGCATGGTGCACCTGGCCCCGGCCC AGCATGCCGGGCTGATCCAGGCGTTCAGCGAAATTGGCGACAACCTCGACGTGCTGGTGATCGACACCGCGGCGGGTATCGGTGATTCGGTGGTCAGCTT
|
|
| Amino Acid Sequence |
>flagellar biosynthesis regulator FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNAELEEELRKTHTRIATAQAELDHRQDSSDNNRQLFAGQSLTAA EPLVEPHIDAPEAAAPAPASAPVDPRLFDAMRSELSGLRELLEVQLGSLAWNQLQGSKPQQATVWRRLQRIGLSGPIARELLDLTAEIDEPRQAWRMLLA HLARMIEIPEVEPIEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAAALEPLLRKRVVL IDTAGLQASDPALRMQLETLAGRGIAAKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYLTDGPRIPDDLHLPRG HQLVTRAVNVQQQDEPSEEAMADMFADLYHNPRRAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|