Pseudomonas plecoglossicida NyZ12, RK21_RS03630

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00953
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044780 bacterial-type flagellum assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01400
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006605 protein targeting
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00953
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppj02040 Flagellar assembly 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01311 Bacterial export proteins, family 1 IPR002010 Type III secretion system inner membrane R protein 14 245 3.2E-66
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 202 221 2.8E-29
NCBIfam TIGR01400 JCVI: flagellar biosynthetic protein FliR IPR006303 Flagellar biosynthesis protein FliR 13 254 1.4E-73
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 22 43 2.8E-29
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 81 100 2.8E-29
Coils Coil Coil - - 247 258 -
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 180 202 2.8E-29
PANTHER PTHR30065 FLAGELLAR BIOSYNTHETIC PROTEIN FLIR IPR002010 Type III secretion system inner membrane R protein 3 256 4.4E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.