Pseudomonas plecoglossicida NyZ12, RK21_RS01510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008615 pyridoxine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00003
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033856 pyridoxine 5'-phosphate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00003
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00003
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppj01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppj00750 Vitamin B6 metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00003 PNPsynthase IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 8 241 2.29041E-130
FunFam G3DSA:3.20.20.70:FF:000042 Pyridoxine 5'-phosphate synthase - - 4 246 5.2E-120
Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 9 241 1.7E-99
SUPERFAMILY SSF63892 Pyridoxine 5'-phosphate synthase IPR036130 Pyridoxine 5'-phosphate synthase 6 242 7.59E-95
NCBIfam TIGR00559 JCVI: pyridoxine 5'-phosphate synthase IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 9 241 2.7E-94
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 246 3.5E-112
Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 1 246 122.898506
PANTHER PTHR30456 PYRIDOXINE 5'-PHOSPHATE SYNTHASE IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 7 244 9.3E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.