Pseudomonas plecoglossicida NyZ12, RK21_RS01240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida strain NyZ12, complete genome. [Details]
DNA Sequence Upstream of Gene
AGGCCGGCGACAACGCCGCCTCGGTGCAGCTGGTGCTGGAAGACGGCAGCCTGTTCAAGCAGGAAGGCCGCCTGGAGTTCTCCGAAGTCGCGGTCGACGA GACCACCGGCTCGGTCACCCTGCGCGCCCTCTTCCCCAACCCCGACCACACCCTGCTGCCAGGCATGTTCGTGCATGCGCGGCTCAAGGCCGGGGTCAAC GCCAACGCCATCCTGGCCCCGCAACAGGGCGTGACCCGCGACCTGAAAGGCGCACCGACCGCGCTGGTGGTCAACCAGGAGAACAAGGTCGAACTGCGCC AGCTCAAGGCCAACCGTACCCTGGGCAGCGATTGGCTGATCGAGGAAGGCCTGAACCCGGGTGACCGCCTGATCACCGAAGGGCTGCAGTACGTGCGCCC GGGCGTCGAGGTCAAGGTCAGCGAAGCCACCAACGTCAAGAAGCCGGCCAGCCCTGTTCAGGCCAACGCGGCGAAAGCAGACGCCAAAGCGGAGTAAACC
DNA Sequence for Gene
>RK21_RS01240
ATGTCGAAGTTCTTTATCGATCGCCCGATCTTCGCCTGGGTGATCGCCTTGGTGATCATGCTGGTCGGCGCCTTGTCGATCCTGAAGCTGCCGATCAACC AGTACCCCAGCATCGCGCCGCCGGCCATCGCCATCGCCGTGACCTACCCGGGCGCCTCGGCGCAAACCGTGCAGGACACCGTGGTACAGGTGATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCGTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCCACCTTCGAGCAGGGCACCAACCCA GACACCGCACAGGTGCAGGTGCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAGGCAGTGA AGAACTTCCTGCTGGTGATCGGCCTGGTGTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTACATCGTCTCCAACATGCAGGACCCGATCTC GCGTACCGCGGGTGTGGGTGACTTCCAGGTGTTCGGTGCGCAGTACGCCATGCGTATCTGGCTCGATCCGGCCAAGCTGAACAAGTTCCAGCTGACCCCG GTCGACGTCAAGACCGCCGTGGCCGCGCAGAACGTGCAGGTATCCTCCGGCCAGCTCGGTGGCCTGCCGGCCATGCCGGGTACCCAGCTGAACGCCACCA TCATCGGCAAGACCCGCCTGCAGACTGCCGAGCAGTTCGAGAAGATCCTGCTCAAGGTCAACAGCGACGGTTCGCAGGTGCGTCTGGGTGATGTCGCCCA GGTTGGCCTGGGTGGTGAAAACTATGCCGTCAGCGCCCAGTTCAACGGCAAGCCGGCCTCCGGCCTGGCAGTTAAACTGGCTACCGGTGCCAACGCCCTG GACACCGCCAAGGCCCTGCGCCAGACCATCGCCGACCTGGAACCGTTCTTCCCGCCTGGGGTGAAAGCGGTATTCCCGTATGACACCACCCCGGTGGTCA CCGAATCGATCAGTGGCGTTATCCACACCCTGATCGAAGCCGTGGTCCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACCATGACCGTACCGGTTGTGTTGCTGGGTACCTTCGGCATCCTTGCCGCTGCCGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTCCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAGAACGTCGAGCGGGTGATGTCCGAGGAAGGCTTGCCGCCCAAGGAAGCGACCAAGCGCT CGATGGAGCAGATCCAGGGTGCCCTGGTGGGTATCGCCCTGGTGCTGTCGGCAGTACTGCTGCCCATGGCGTTCTTCGGCGGCTCCACGGGTGTGATCTA TCGGCAGTTCTCCATCACCATCGTCTCGGCCATGGGCCTGTCGGTGCTGGTGGCGCTCATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGCCGCTG AAGAAGGGCGAGCACCATGTGGCCAAGCGTGGCTTCTTTGGCTGGTTCAACCGCAACTTCGACCGCAGCGTAACCGGCTACGAGCGCAGCGTGGGCACCA TCCTGCGCAACAAGGTACCGTTCCTGCTGGCCTACGCGCTGATCGTGGTCGGCATGATCTGGCTGTTCGCCCGCATCCCTACCGCGTTCCTGCCGGAAGA AGACCAGGGCGTATTGTTTGCCCAGGTACAGACCCCGGCCGGCTCCAGTGCCGAGCGCACCCAAGTGGTGGTCGACCAGATGCGTGAGTACCTGCTCAGC GAAGAGGCCGACACCGTGGCTTCGGTTTTCACCGTCAACGGCTTCAACTTCGCCGGCCGTGGCCAGAGCTCGGGTATGGCATTCATCATGCTCAAGCCGT GGGATGAACGCTCCAAGGAAAACAGCGTGTTCGCCCTTGCCCAGCGTGCCCAGCAGCACTTCTTCACCTTCCGCGATGCGATGGTGTTCGCCTTTGCCCC GCCTGCGGTGCTCGAACTGGGTAACGCCACCGGCTTCGACGTGTTCCTGCAGGACCGCGGCGGTGTCGGCCATGCCAAGCTGATGGAAGCGCGCAACCAG TTCCTGGCCAAGGCCGCGCAGAGCAAGATCCTCAGCGCCGTGCGCCCGAACGGCCTGAACGACGAGCCGCAGTACCAGCTGACCATTGATGACGAGCGTG CCAGCGCCCTGGGCGTGACCATCGCTGACATCAACAACACCCTGTCGATTGCCTTGGGTGCCAGCTACGTCAACGACTTCATCGACCGTGGCCGGGTCAA GAAGGTGTACATCCAGGGCGAGCCGAACGCGCGGATGAGCCCGGAAGACCTGCAGAAGTGGTACGTGCGCAATGGCGCCGGCGAAATGGTGCCGTTCTCC TCCTTCGCCAAGGGCGAATGGACCTACGGTTCGCCGAAGCTGTCGCGTTACAACGGCGTCGAGGCAATGGAAATCCTCGGTGCTCCGGCCCCGGGCTACA GTACCGGTGAAGCCATGGCCGAGGTCGAGCGCATTGCTGGCGAATTGCCAAGCGGCATCGGCTTCTCCTGGACCGGCATGTCCTACGAGGAAAAACTCTC CGGTTCGCAGATGCCGGCACTGTTCGCCCTCTCGGTACTGTTCGTGTTCCTGTGCCTGGCAGCCCTGTACGAAAGCTGGTCGATCCCGATCGCCGTGGTA CTGGTAGTACCGCTGGGTATCATCGGTGCCCTGATCGCCACCAGCATGCGCGGGTTGTCCAACGACGTATACTTCCTGGTCGGCCTGTTGACCACCATCG GCCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTGCACGAACAAGGCCGCAGCCTGTACGACGCGGCGATCGAGGCGTGCCGCAT GCGTCTGCGCCCGATCATCATGACCTCGCTGGCGTTCATCCTCGGCGTGGTACCGTTGACTATCGCCAGCGGCGCCGGCGCCGGCAGCCAGCACGCCATC GGTACTGGTGTGATCGGCGGCATGATCAGTGCGACCGTGCTGGCTATCTTCTGGGTACCACTGTTCTTCGTCGCAGTGTCGTCACTGTTCGGCAGCAAAG AGCCGGAAAAAGACGTCACCCCTGAAACTCCACGTTATGAGGCTGGGCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCAAGTCTTTGTTGTCCCTGGCAGTAACCGCTTTCATTCTTGGCGGCTGCTCGCTGATCCCTGACTACCAGACCCCGGAATCGCCGGTGGCTGCGCAGTG GCCGCAAGGCCCGGCTTACTCGCCGACGCAGTCGGCGGAGGTTGCCGCCGCCGAACAGGGCTGGCGTCAGTTCTTCCACGACCCGGCCCTGCAGCAGCTG ATCCAGACCGCGCTGGTGAACAACCGCGACCTGCGCGTTGCCGCGTTGAACATCGACGCCTACCGTGCGCAGTACCGCATCCAGCGTGCCGACCTGTTCC CTGCGGTTTCGGCCAACGGTAGCGGCAGCCGCCAGCGCGTACCGGCGAACATGTCGCAGACGGGCGAAGCGGGCATCACCAGCCAGTACTCGGCCACCCT GGGCGTCAGCGCCTATGAGCTGGACCTGTTCGGCCGCGTGCGCAGCCTGACCGAGCAGGCCCTGGAAACCTACTTGTCCAGCGAGCAGGCGCGTCGCTCC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNKFQLTP VDVKTAVAAQNVQVSSGQLGGLPAMPGTQLNATIIGKTRLQTAEQFEKILLKVNSDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL DTAKALRQTIADLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVL AIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPL KKGEHHVAKRGFFGWFNRNFDRSVTGYERSVGTILRNKVPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLS EEADTVASVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHAKLMEARNQ FLAKAAQSKILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPNARMSPEDLQKWYVRNGAGEMVPFS SFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIAVV LVVPLGIIGALIATSMRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAI GTGVIGGMISATVLAIFWVPLFFVAVSSLFGSKEPEKDVTPETPRYEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site