Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS00375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCTGGCCCGCGATGGCGACCGCGACGCGGTGTTCAACGTCTATGAATCGCTGCTGGTGTCGCCACCCAGCGACGCCGGGGTCATCGTCAGCCTGCTGG ATGACCCCAAGGTCCAGGCCCAGGGCTTCGTTCGCGAAATCACCCCGACGGTGTCGGCGCAAAGTGGCACGGTGCAGGTCAAGGTGTCCTTGCGCAACGT ACCGCCGGCCATGCAGCTGGGCTCGCCGGTGACCGCCACGGCCAATGCCCAGGGGCGGCCGAGCATCGAGCTGCCTTGGGCTGCGCTGACCAAGGATGTG CACGAGCCTGGCGTATGGGTAGTGGGTGCCGACGACAAGGTCGAATTGCGCAAGGTCCAGGTGGCCCGCTACCTCACCGGCAAGGTCGTCATCGCCGAAG GTATCAAAGGGGGCGAGACCGTCGTGGTCAGTGGTGGCCAGCTGTTGCATCCAGGCATGCAAGTGCAGAAGGTCGATGCCAAGGATGGAGGAGCCGCACC
|
|
| DNA Sequence for Gene |
>PPL01S_RS00375
ATGAGGCGAATGTTGTTCGTGCTTGCCAGCGGCCTGCTGTTGACGGCCTGCGGCAAAGAAGAAGCGCCCGCCGAAGCCGTGCGCCCGGTGCTTTCGACCC TGGTGGAAGCCCAGGACCAGTCGCATCTGGGTCGCTTCGCCGGGACTATCCAGGCGCGCTTTGAAAGCACCCTGGGCTTTCGTGTTGCCGGGCGCATCGC CCGTCGCTGGCTCGACGTGGGCGCCCAGGTCAAGCCTGGCGACACGTTGGCCACGCTCGACCCGACCGATCAGCAGAACCAGCTGCGTGCCGCCGAGGGC GACCTGGCCAAGATCCAGGCGCAATGGATCAACGCCCAGGCCAATGCCCGTCGTCAGCAACAGCTGTACGACCGCGGCGTCGGTGCCCAGGCACAGCTGG ACATCGCCCAGACCGACCTGAAAACCACCAGTGCCAGCCTGGAGCAGGCCCGCTCGGCCGTCAGCCAGGCGCGCGACCAGCTCGACTACAGCACGCTGCG CACCGACCATGCGGCGGTCATCACCAACTGGCAGGCCGAGGCCGGGCAGACGGTGACAGCGGGCCAGCCGGTGGTCACCCTGGCTCGCCCGGACGTCAAG GAAGCAGTGATCGATCTGCCGATCGGCATTGCCGAGGCGCTGACCAAGGACCTCACCTTCACCGTCGCCTCGCAACTGGACAGCAGCATCAATACCACCG CCACCCTGCGCGAACTGGGGCCCCAGGCCGACGCAGCCACCCGCACGCGGCGCGCCCGCCTGACCTTGGCCAGCACGCCCAGTGCCTTCCACCTGGGCAC CGCGATCAGCGTCACCCTGACCTCGGCGATTTCCCCGCGCAGCGAACTGCCCCGCAGTGCGCTGCTGGAACACGAGGGCAAGACGCAAGTGTGGGTGATC GACCCGCAGCAGAAAACCGTCGCCATGCGTGACGTGAAGTTGATCGAGCGCACGGACGACAGCATCGTGCTGGCATCCGGCGTGCAGCCTGGCGAACGTG TCGTTACCGCCGGCGTAAACAGTCTCAAGCCAGGCCAGAAGGTCACATTCGACGAGGATTCACAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGGAAGCTTCAACCTCTCCGAATGGGCACTGCGTCACCAGTCGTTCGTCTGGTATCTGATGTTCGTCGGCCTGCTGATGGGCATTTTTTCGTACTTCAA CCTGGGCCGTGAGGAGGACCCGTCGTTCACCATCAAGACCATGGTGATCCAGACCCGCTGGCCCGGTGCGACCCAGGACGAGACGCTGTATCAAATCACC GACCGTATCGAGAAGAAGCTCGAGGAACTCGATTCCCTCGATTACACCAAGAGCTACACCCGCCCCGGCGAGTCCACGGTCTACGTCTACTTGCGCGATA CCACCAAGGCGCCCGACATCCCGGAAATCTGGTACCAGGTGCGCAAGAAGATCCAGGATATCCGCGGCCAGTTTCCGCAAGGTATCCAAGGGCCAGCGTT CAACGATGAGTTCGGTGACGTGTATGGCTCGATCTACGCCTTTACCTCCGACGGCCTGACGCATCGTCAGCTGCGCGACTACGTGGAACAAACCCGCGCC
|
|
| Amino Acid Sequence |
>RND family efflux transporter MFP subunit
MRRMLFVLASGLLLTACGKEEAPAEAVRPVLSTLVEAQDQSHLGRFAGTIQARFESTLGFRVAGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEG DLAKIQAQWINAQANARRQQQLYDRGVGAQAQLDIAQTDLKTTSASLEQARSAVSQARDQLDYSTLRTDHAAVITNWQAEAGQTVTAGQPVVTLARPDVK EAVIDLPIGIAEALTKDLTFTVASQLDSSINTTATLRELGPQADAATRTRRARLTLASTPSAFHLGTAISVTLTSAISPRSELPRSALLEHEGKTQVWVI DPQQKTVAMRDVKLIERTDDSIVLASGVQPGERVVTAGVNSLKPGQKVTFDEDSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|