Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS01490

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0001530 lipopolysaccharide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01914
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015920 lipopolysaccharide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01914
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01914
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR36504 LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA - - 5 173 4.7E-35
Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. IPR014340 Lipopolysaccharide export system protein LptA 4 170 25.613382
Gene3D G3DSA:2.60.450.10 Lipopolysaccharide (LPS) transport protein A like domain - - 26 174 1.4E-39
Pfam PF03968 LptA/(LptD N-terminal domain) LPS transport protein IPR005653 Organic solvent tolerance-like, N-terminal 35 146 4.9E-25
NCBIfam TIGR03002 JCVI: lipopolysaccharide transport periplasmic protein LptA IPR014340 Lipopolysaccharide export system protein LptA 24 170 7.6E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.