Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS02460

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 31 41 9.9E-5
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 11 64 3.8E-20
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 5 289 8.5E-86
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 41 52 9.9E-5
Gene3D G3DSA:3.40.190.290 - - - 91 287 2.4E-69
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 289 1.7E-49
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 5 90 2.2E-23
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 3 86 1.9E-24
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 89 288 1.1E-70
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 20 31 9.9E-5
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 89 2.73E-22
CDD cd08470 PBP2_CrgA_like_1 - - 93 289 5.50149E-124
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 90 292 3.62E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.