Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS05190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCACAGGGAGCGCGGTGATCTCGGCAACTGTGGGCGCTGGCTTGCCAGCGATGCAGCCACCGCAGGTCCATCGGGTAAAACAGCGCTTCCCTATTGGC TGGTGATTTTTTAAACTATCGAGTCCGCCTGCCCATCTTGGGCTGCACGCCCACCGCATTTGCTACTGAGGAAGACCATGGCCCGCGTAACTGTTGAAGA CTGCCTGGAACACGTGGATAACCGTTTTGAGCTGGTCATGCTCTCGACCAAGCGCGCCCGTCAGCTGGCTACCGGCGGCAAAGAGCCGCGCGTAGCGTGG GAAAACGACAAACCGACCGTGGTCGCCCTGCGCGAGATCGCCGAAGGTATCGTCACCCCCGAGTTCATCGCCGCCGAAGAGATCGTCACCGAGGATCCGG TCTTCGCCGCGTTCGAGGACGAGTCCAACGAGGCTGTCTGATCCATGCCTGGTCGACGTTGCGCGGCACAAGGCCCTCTTCCTCGGCAAGAGGTGAAATC
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| DNA Sequence for Gene |
>PPL01S_RS05190
ATGCCGGGCATAGAAGCCTTAGCCGAACGGCTGTCGACCTACCTGGGCCCCGAACAGGTCAACCTGGTTCGCCGGGCCTACTTCTACGCCGAACAGGCGC ACGATGGGCAGCGCCGCCGCAGCGGCGAGCCCTACGTGACCCATCCGCTGGCCGTCGCCAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCACGACGTGATCGAAGACACCGGCATCGCCAAGGAAGCCCTCAGCCAGCAGTTTGGCGAGACGGTGGCCGAACTGGTCGATGGGGTC AGCAAGCTGACCCAGATGAACTTCGAAACCAAGGCCGAGGCGCAGGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGATATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTCCTGTCGGGCGAAAAGCGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC CCCCATCGCCAATCGCCTGGGCATGCACACCGTGCGCGTGGAATTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATCCACCGG GCGGTCAAGAGCGCACGCGGCAACCGCAAGGAAATCGTCGCCAAGATCGAGCACTCGCTGGCCAACTGCCTGGCTGCCGACGGCATCCAGGGCGAGGTCA GCGGGCGGCAGAAGCACCTCTATGGCATCTACAAGAAGATGCGCGGCAAGCGTCGCGCCTTCAACGAGATCATGGACGTGTACGCCTTCCGCATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTGCACAACCTGTACAAGCCGCTGCCCGGCCGGTTCAAGGACTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGTTGCACACCACCTTGTTCGGCATGCACGGGGTACCCATCGAAATCCAGATTCGCACCCACGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCGCACTGGCTGTACAAGTCCAACGACGACGAGCAGCCCAAGGGCAGCCATGCCCGCGCCCGTCAGTGGGTCAAGGGCATCCTCGAGCTGCA GCAGCGTGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTCACCCCGAAAGGGCGGATCATGGAG CTGCCCAAAGGCTCCACAGCCGTCGACTTCGCCTACGCGGTGCATACCGACGTCGGTAACAGCTGCATCGCCTGCCGCATCAACCGGCGCCTGGCGCCGT TGTCCGAGCCGCTGCAGAGCGGCTCCACGGTGGAAATCGTCAGCGCCCCCGGCGCGCGACCCAATCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGTCACGCGCTCAAGCAGCAGCGTCGCTCCGAGTCGATCAGCCTCGGCGAGCGCCTGCTGAACAAGGTATTGACCGGCTTCGACAGC AGCCTGGAACAGATCCCCCACGAGCGTATCCAGTCGATATTGACCGAATACCGCCTGGAGTTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTATGTGGTCGCCCGTCGCCTGCTGTCAGCCGAAGGCGAACCGTTGCCGGCGCCGGAAGGCCCGCTGGCGATCCGCGGCACCGAAGGCCTGGT GCTGAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATCGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGC AACATCAGTGAAATCCGCCATAACCCGGAGAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACCGGTGAGTTCAACGTCGAACTGCGCGTCGAGCTCG AGCACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAATGCCGCCGACGGCAACATCGAGAAGATCAGCATGGATGAACGCGACGGTCGTATCAG CGTTGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCTCGTGTGATCAAGAAACTGCGTACGCTGACCGGCGTGGTCCGCATCACCCGCATG CGTACGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCAACCGCAAGGAGTCATCATGAGCAAGACCGTCATCAACAGCGACAAGGCCCCAGCGGCCATCGGCACTTACTCGCAGGCGATCAAGGCCGGCAA TACCGTGTACATGTCGGGCCAGATCCCGCTGGACCCGAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCGTGCAGGTGTTCGAGAACCTCAAG GCCGTGGCCGAAGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTCAGCCATTTCGCCAAGGTCAACGAGGTGATGG GCCGCTACTTCGAGCAGCCCTACCCAGCCCGCGCCGCCATTGGCGTTGCCGCGCTGCCGAAAGGCTCGCAGGTCGAAATGGACGCCATCCTGGTCATCGA GTGATGCCGCTGGTGACGGGCGCCCTGCCCGTCACCTTCCTGTTCAAGGTTATCCCATCATGCGTCAAGCACTGCCTCTCGCGCTGGCAGCCCTGCTCCT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPGIEALAERLSTYLGPEQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALSQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLIHR AVKSARGNRKEIVAKIEHSLANCLAADGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTHEMEEMANNGIAAHWLYKSNDDEQPKGSHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLTGFDS SLEQIPHERIQSILTEYRLELIEDLLEDIGLGNRMAYVVARRLLSAEGEPLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCVQLSWAKDITGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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