Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS04675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACTGCCACACGACGCGGCGTTCTTCATCGCCCAGCGTATTCGCTCCAACGTGCGTGAACTCGAAGGCGCGCTCAAGCGTGTGATCGCTCACTCGCAC TTCATGGGCCGCGATATCACCATCGAGCTGATTCGTGAATCGCTGAAGGACCTGTTGGCGCTGCAGGACAAGCTGGTCAGTGTGGATAACATTCAGCGCA CCGTGGCCGAGTACTACAAGATCAAGATCGCCGATCTGTTGTCCAAGCGTCGCTCGCGTTCCGTCGCGCGCCCACGCCAGGTGGCCATGGCGTTGTCCAA GGAGCTCACCAACCACAGTCTTCCGGAGATCGGCGACATGTTTGGTGGCCGTGACCACACCACCGTGCTGCACGCCTGCCGCAAGATCAACGAATTGAAG GAATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGCACGCTGACGACCTGATGGCCGTCAGCCCAGCTAATTGAAGGCAAGGGACTAGACC
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| DNA Sequence for Gene |
>PPL01S_RS04675
ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCCGGTGTCGTCGAGCGCCGCCAGACCTTGCCGGTCCTGTCCAACGTAC TGCTGGTCGTACAAGGCCAGCAGCTGTCGTTGACCGGTACCGATCTGGAAGTCGAACTGGTAGGCCGCGTGCAACTGGAAGAGCCGGCCGAGCCTGGCGA GATCACTGTCCCGGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCGAACGACGTTCTGATCGACATCAAGGTCGATGAGCAGAAGCTGTTGGTCAAG GCCGGTCGCAGCCGTTTCACCCTGTCGACCCTGCCGGCGAACGACTTCCCGACCGTGGAAGAAGGCCCAGGCTCGCTCACCTGCAACCTGGAGCAGAGCA AGCTGCGTCGCCTGATCGAGCGCACCGGCTTCGCCATGGCCCAGCAGGATGTTCGTTACTACCTGAACGGTATGCTGCTAGAGGTAGATACGAACCATAT TTGCGCCGTATCCACCGATGGGCATCGTCTGGCGCTTTGCTCCATGCATGACAGTATCGATCATTCCAACCTTCATCAGGTGATCGTTCCGCGCAAAGGC ATCCTCGAGCTGGCGCGCTTGTTGAACGAGCCTGATGGGCAGGTCAGCATCGTTCTGGGTCAACACCACATCCGTGCTACCACTGGGGAGTTCACCTTCA CTTCCAAGCTTGTTGATGGCAAATTCCCGGACTATCAGCGTGTGCTGCCAAAAGGTGGGGACAAGGTAGTGGTCGCAGATCGTCAGGCGCTTCGCGAAGC GTTTAGCCGAACGGCGATTCTGTCGAATGAAAAGTACCGCGGCATTCGCCTGCAATTGTCTGCCGGCCTTCTGAAGATCCAGGCCAACAACCCTGAGCAG GAAGAAGCCGAAGAAGAAATCAGCGTCGACTACGAAGGTAGCTCGCTGGAGATCGGCTTCAACGTCAGCTACCTGCTGGACGTGCTGGGCGTGATGACTA CCGAGCAAGTTCGTCTGATCTTGTCTGACTCCAACAGCAGTGCGCTGCTGCAGGAAGCCGGCAATGACGATTCTTCCTACGTAGTCATGCCGATGCGCCT GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTAGCAGGCCAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACCTGCACCCGGTGACTCTCACACCCTCTCCCCGCATCAACATCCTCTAC GGCGCCAATGGCAGTGGCAAAACCAGTGTGCTCGAAGCTGTGCACCTGCTTGGTTTGGCCCGCTCATTTCGCAGCACCCGCCTGAACCCGGTCATTCAGT ACGAACAACCTGCGTGCACGGTGTTTGGCGAGGTGCAGCTGAATGAGGGTGGTACCAGCAACCTGGGTGTTTCTCGCGAACGCCAAGGGGAGTTCACCAT TCGCATCGATGGGCAGAATGCACGGAGTGCTGCGCAATTGGCGGAATTGTTGCCGTTGCAGCTCATCAACCCAGACAGTTTTCGACTGCTGGAAGGCGCC CCGAAGATCCGACGGCAGTTCCTGGATTGGGGAGTGTTCCACGTGGAACCCCGATTCATGCCAGCCTGGCAACGTCTGCAGAAGGCGCTGCGGCAGCGGA
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| Amino Acid Sequence |
>DNA polymerase III subunit beta
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEPGEITVPARKLMDICKSLPNDVLIDIKVDEQKLLVK AGRSRFTLSTLPANDFPTVEEGPGSLTCNLEQSKLRRLIERTGFAMAQQDVRYYLNGMLLEVDTNHICAVSTDGHRLALCSMHDSIDHSNLHQVIVPRKG ILELARLLNEPDGQVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYQRVLPKGGDKVVVADRQALREAFSRTAILSNEKYRGIRLQLSAGLLKIQANNPEQ EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSSYVVMPMRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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