Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS06840
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01347 | ligand_gated_channel | - | - | 45 | 677 | 2.43098E-58 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 203 | 237 | - |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 41 | 144 | 6.1E-20 |
| PANTHER | PTHR30069 | TONB-DEPENDENT OUTER MEMBRANE RECEPTOR | IPR039426 | TonB-dependent receptor-like | 19 | 677 | 9.0E-77 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 216 | 230 | - |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 38 | 154 | 7.8E-29 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 38 | 677 | 3.4E-98 |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 157 | 677 | 4.1E-74 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 225 | 675 | 1.1E-47 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.