Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS10235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAGCAGCGTTTGCTGGAAAATGCCTGGCCGGCGATAAAACCCTTGCTGTGACGCTTTAAACGGGACTGGCTTTCGGCTAATGTTGCGCCCCCCGTTT CGAGAGCCCCCGATGCCGCGCCCTGCCTGGTCCTTGTATGCCTATCAACTGATCGAGCCCGATGAGCAGCTCGACCTGTTCGCTTGCCAGGAAATCCGCG TCCACCTGGTGGCCCGCCAACTCGAGCTTGGCGTGCCGGTCGACCGCACCCTGTGCGGCGGCCTGCTGCCGGCACAGCCCCGTTGGTCCGGCGTGCCCCG CGCGATCTACCGAGACGGTCGGTTGTGCGACCTGTGCCGGGCGATTCTCGATGCCCAGCGGCGCGGAATGCGCCCTATCTGGCCGGAACTCTGAGCGCCT TTCATCATCTGAAACGCTTGTGGGTCGCCAATGCCTCCCGCTCGCATCGGAGCGGGTGTACAATCGATGGTCTTGACCCACCTTTCGAAGGATTTACCGG
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| DNA Sequence for Gene |
>PPL01S_RS10235
ATGTTGCCGCGCTTTCCCGCCGTCACCCGTTGCCTGACCCTGGCCGCCCTGCTGGTTGCGGGCCCCGCCGTCGCGTTGGAGCTGCCCCTGCCGCCACCCG GTGAAGACATCGTTGGCCAGGTACAGGTGATCAAGGCCAAGTACGAGGACACCTTCGCCGACATCGGCACCGCCAACGACCTTGGCTACCTGGAGATGAT CGCCGCCAACCCGGGTGTCGACCCCTGGTTGCCGGGCGCCGGCACCGAAATCATCCTGCCGACCCGCTACATCCTGCCGCCGGGTCCGCGTGAAGGCATC GTCATCAACCTCGCCGAGTACCGCCTGTACTACTTCCCGAAAGGGCAGAACGTGGTGCATACCTTCCCCCTGGGCATCGGTCGTGAAGGGTGGGGCTCGC CTATCGCCAACACCAAGATTACCGCCAGGACGCCGAACCCGACCTGGACGCCGCCTGCCTCGATCCGCAAAGAGCATGCTGCGGACGGCGACATCCTGCC CGCCGTGGTGCCGGCAGGTCCAGACAACCCGCTGGGCCCCTTCAAGTTCACCCTGGGCGTTCCGGGCTACCTGATTCATGGTTCGAACAAGAAGTTCGGT ATCGGCATGCGTACCAGCCATGGCTGCTTCCGCATGCTCAACAACAATGTGCTCGAACTTTCGAAGATGGTCCCTGTAGGAACACCGGTGCGCATCATCA ACGAGCCTTACAAGTTCGGTATCAGTGCTGGCAAGGTTTATCTGGAAGCGCACACGCCGCTGGACGATCACGGCAACCCGTCGGTGGTCGACAAGCATAC GGCGGTGATCAACGCGTTGCTCAAGCGTGAAGACCTCGCCAACAACCTGCGCATGAACTGGGACATGGTGCGTGATGTGGTTGCCGCGGAAGACGGCATG CCTGTCGAGATCGCAGTGCCGGTCAATAACCAGGGCGCGGCACCCATGGTTTCGAGCATCCCGCCAGAACTGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCTCTAGCGTTACATCAAGGCCTGCCCCCGGCTGAACGTCGAGGGCAGGCCTTGTGCTATCTGCCAGACGCTTTTGCCGAGGCAATAAAAAAGCCGAC CCACAAGTGGGTCGGCTCCATAACAATCCGTGAGGATTATTACTTGCGGCTGGCTTTGTCCAGCATACGCAGAGCGCGCTCGTTGGCTTCGTCAGCGGTC TGCTGAGCCTTCTGAGCGGCCGCCAGAGCGTCGTCAGCCTTACGGTAGGCTTCGTCAGCACGGGCTTGAGCGCGAGCTGCTGCGTCTTCAGTCGCAGTCA GACGAGCTTCGGTTTCTTTGGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAGAGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCC CTTCAAGGACTTTCTATTAAATAGCCATCTCTCGGAAAAGAGAAACTGGCCGGCGTACATAGTACCCATTACTTGTAGTAAGTAAACTGACAGAGCGCAA
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| Amino Acid Sequence |
>transpeptidase
MLPRFPAVTRCLTLAALLVAGPAVALELPLPPPGEDIVGQVQVIKAKYEDTFADIGTANDLGYLEMIAANPGVDPWLPGAGTEIILPTRYILPPGPREGI VINLAEYRLYYFPKGQNVVHTFPLGIGREGWGSPIANTKITARTPNPTWTPPASIRKEHAADGDILPAVVPAGPDNPLGPFKFTLGVPGYLIHGSNKKFG IGMRTSHGCFRMLNNNVLELSKMVPVGTPVRIINEPYKFGISAGKVYLEAHTPLDDHGNPSVVDKHTAVINALLKREDLANNLRMNWDMVRDVVAAEDGM PVEIAVPVNNQGAAPMVSSIPPELQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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