Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS11125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR03349 | JCVI: DotU/TssL family secretion system protein | IPR017732 | Type IV / VI secretion system, DotU | 79 | 288 | 2.2E-64 |
| Gene3D | G3DSA:1.25.40.590 | Type IV / VI secretion system, DotU | IPR038522 | Type IV / VI secretion system, DotU superfamily | 77 | 234 | 1.3E-47 |
| NCBIfam | NF038228 | NCBIFAM: type IVB secretion system protein IcmH/DotU | - | - | 77 | 292 | 3.9E-47 |
| Pfam | PF09850 | Type VI secretion system protein DotU | IPR017732 | Type IV / VI secretion system, DotU | 80 | 282 | 8.0E-61 |
| PANTHER | PTHR38033 | MEMBRANE PROTEIN-RELATED | - | - | 75 | 296 | 4.4E-59 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.