Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS11975

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 703 795 0.0026
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 599 665 4.3E-14
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 52 263 2.1E-21
SMART SM00086 pac_2 IPR001610 PAC motif 530 571 5.9
Gene3D G3DSA:3.30.450.20 PAS domain - - 316 436 1.6E-23
Gene3D G3DSA:3.30.450.20 PAS domain - - 449 569 1.8E-20
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 44 265 2.9E-17
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 665 795 5.8E-29
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 338 448 9.02E-22
Gene3D G3DSA:3.40.190.10 - - - 129 224 1.4E-44
Gene3D G3DSA:1.20.5.1930 - - - 570 658 1.5E-13
SMART SM00091 pas_2 IPR000014 PAS domain 326 392 0.014
SMART SM00086 pac_2 IPR001610 PAC motif 399 439 0.47
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 208 794 3.2E-56
Gene3D G3DSA:3.40.190.10 - - - 35 261 1.4E-44
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 672 792 1.96E-18
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 705 794 8.4E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 478 578 3.3E-10
CDD cd00130 PAS IPR000014 PAS domain 345 436 4.83398E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 436 569 9.99E-19
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 708 792 3.83299E-27
CDD cd01007 PBP2_BvgS_HisK_like - - 42 262 1.24956E-50
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 45 264 4.96E-34
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 331 445 9.8E-15
Pfam PF08447 PAS fold IPR013655 PAS fold-3 480 564 2.0E-15
CDD cd00130 PAS IPR000014 PAS domain 480 568 3.71729E-5
Pfam PF08448 PAS fold IPR013656 PAS fold-4 333 441 1.4E-8
SMART SM00091 pas_2 IPR000014 PAS domain 451 524 4.6
Coils Coil Coil - - 578 598 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.