Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS15340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGTGTACAGGGATGACACATGAGTAACCAGGCCCGCCTGCTGCCTTCGCTGCTCGACCGACTGCTGGACGACCGTCCGTACCAGTCGGCCGAGCCTGCCG TGCAGCGCACCTGTTCGCTGGCCGAATACAAGGCGAGCATCGTCCGCGACCTGGAGGTACTGGTGAATACCCGCCAGTCCCTGATCGCCGACGAACTCGG CGGCTTCAGCCAGCTCGGTGGCTCCATCCTTGAATACGGCATGCCCGACTTCATCAGCCGCAGCGTGCTCGACCCGCAGGATCGCCGGCTCATCCAGCAG CAGCTGGAGCGGGCGATCAGCACCGGCGACCGGCGTTTTCGCCGGGTCCGCGTACAACTGCTGGCCCAGCAGAACGGCCACCGCATGTTGACCTTCCGGG TAGACGCCGTGCTGCGTCTGCAGGACATCAGCCGCCAGGTGTCGTTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAACCTCAACTG
DNA Sequence for Gene
>PPL01S_RS15340
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTCCTCGGCCAGGAGTTCGCTGCGCAGTACCCGAAAATCGCCTCGCGCC TGCTGATCGAGGGCGACAACTGCGAGGACCCGCACACCGAGCGCCTGATCGAGGCGTTCTCGTTCCTGTCGGCGCGGGTGCATAAAAAGCTGGACGACGA GTTCCCGGAAATCGTCGAGTCGTTCCTCGAGGTGCTGTACCCGCACTACCTGCGCCCTACCCCGTCGATGTCGATCGCCGAGCTGAGCCTGGGCAAGCAG GAGAAAGTCACCGAGGCCTACCGCGTGGCCCGGCACACCGAGATGGTGGCCAATGCCGTCGAGGGCGTGGTGTGCAAGTTCCGCACCTGCTACCCGGTGG AGCTGTGGCCGATCGCCGTGCAACAGGCCTCGTTCGCCGAAATGGAACGCTCGGCCTTCAACGGCCACAGCGCCGACCTGGTGGCGCGCCTGCGCATTCG CCTGCAAGCCACCGGCGACGTGAAGTTCGGGCAAATGCAGATGGACCGGCTGCGCTTCTTCCTCGATGGCGAAGCGACGCTGATGCTGCAGCTGTACGAA CTGCTGTTCAACAACCTGGCCAAGGCCACCCTGAGTTTCCTGGACGAAGGCCGCCCGCGTGAAGTTGCCTTGCCACGCGATGCCCTGAAGGCCGTGGGCT ATGCCCGCGACGAAGGCCTGGTGGACTACTCCGAGCGCTCGTTCCTGGGCTATCGCCTGCTGCACGAGTACTTCACCTTCCCCGACAAGTTCATGTTCTT CGACCTCTCGGGGTTTGCCCGCATCCTGCAGGGCAAGACCATCGAGCAAGTGGAGATCAACTTCTACTTCAACGACTACGACCTCAGCGAGCGCCTGGCG CGGCTGACCCAGAACATCGGGCGCAACAACTTCAAGCTCAACTGCACGCCGATCATCAACCTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTCACCCACA CCCAGCACGAATACCCGGTGACTCCGGACATCCGCCTGCACAACGCCGCCGAAGTGGTGTCGATCGACCGCGTGCGCCGGGTGCGCAAGCTCGGCGGCAT CGACCAGGTCGGCACCTGCCAGCCGTTCTTCGAGCCGCGTGGCGAGCAGGACCCGCACAACAGCTTCTGGATCGCCCGCCGGCGCAACCAGGGCGACGCC ACCGCCATGAGCATCCGCGTGGTCGACCGCGACCTTGAGCTGATCGACGGCAACAGCGACACCCTGAGCATCACCCTGACCTGCAGCAACCGCGACATCC CGCTGATGCTGCCGTTCGGTGGCGAGCATGGCGACTTCAACATCCCGGCCAACTCGGTGATCAAGGACATCCGCTGCCTGCGCAAGCCCACCGCCACGGT GCGCGTGCCGCTGGGCAAGGGCCTGATCTGGCGGTTGATCGCGCACCTGTCGCTCAACCACCTGTCGCTGGTCAGCCAGGGCCGCGAAGTGCTGCTGGAA CTGCTGTCGCTGTACAACTACCGCAACGTCTCGGCCATCCGCAAACAGATCAACGGCATCAAGGCCATCAGCAGCGAGCCGACGGTCGCCCGGATCGGCC ACCCGCGGCCGAACTTCGTGCGCGGCGTGGGCATCACCCTGACCTTCGACGAAAGCCAGTTCACCGGCAGCGGCGTGTACCTGTTCGGCATGGTGCTGGA CCACTTCTTCGGCCAGTACTGCTCGATGAACAGCTTCACCCAACTGACCCTGCGCACCCAACAACGAGAAAAGAGAGTCGTCCAATGGCCAGCACGTACT GGCGATCAGCCCCTGGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGATCAGGCCAGAGCCGAGCCGCACCGATTCGAATTCTTCCAATTGGTGCGTCTGCTTCGCCTGCACTACAGCCGCACCGGCCGCATGGACCTGGCAAC GCGGCCGCACGAAGACCCGCTGCGTTTTCGCACCCAGCTGTCGCTGGCGTTCCCCGCCAGCGAAGTCAGCGACCTGCACTTCGAGCGCGAAGGCAAGGTG TCACCGGCCGGGCTGCCGCTGTCGGAAGTGCAGGTCACCTTCATGGGGCTGGTCGGGCCGTCCGGCGTGCTGCCGCGCCCTTATACCGAGCTGTTGCTGG AACGCCACGTGCAATACCGCGACGATGCCGCCCACGCGTTTCTCGACATCTTCTCGCACCGCATGACCACGCTGTTCTACGAAGCGTGGCAGAAGTACAA GTTCCATATCGAGCACGAGCGCAACGGCACCTCGGGCTTCGACGGCTACCTGCTCAACCTGGTGGGCCTGGGGCCGCGTGCCCAGGCGCTGAAGTTCGAA
Amino Acid Sequence
>type VI secretion system protein ImpG
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIAELSLGKQ EKVTEAYRVARHTEMVANAVEGVVCKFRTCYPVELWPIAVQQASFAEMERSAFNGHSADLVARLRIRLQATGDVKFGQMQMDRLRFFLDGEATLMLQLYE LLFNNLAKATLSFLDEGRPREVALPRDALKAVGYARDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKTIEQVEINFYFNDYDLSERLA RLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYPVTPDIRLHNAAEVVSIDRVRRVRKLGGIDQVGTCQPFFEPRGEQDPHNSFWIARRRNQGDA TAMSIRVVDRDLELIDGNSDTLSITLTCSNRDIPLMLPFGGEHGDFNIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLIAHLSLNHLSLVSQGREVLLE LLSLYNYRNVSAIRKQINGIKAISSEPTVARIGHPRPNFVRGVGITLTFDESQFTGSGVYLFGMVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPART GDQPLV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site