Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS19540

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCAGATGAACTTCGTCGACAACCAGGTCAACCCGCGTACCGGCACCATCCGTGGCCGCGCCGTGTTCGACAACCGCGACGGCCAGTTCACCCCGGGGCT GTATGCGCGCCTGAAGCTGGTCGGCAGCGCCCAGTACGACGCCATGCTGATCAACGATGAAGCGGTCGGCACCGACCTTGGCAAGAAGTTCGTGCTGGTC ATGGACAAGGACAACAAGGCGACTTACCGCGCCGTGGAGCTGGGGCCGAAGCTCGAAGGCCTGCGCATCGTGCGCAGCGGCCTGGCCAAGGACGACCGCA TCGTGGTCAAGGGCCTGCAACGGGTTCGCCCCGGCTCGCCGGTGACCCCGGAGGAAACGCCGATGGCCAGCGAACAGACCCTCGCCGCCCTCGCCCAGCA GCGCCAGGCCCTGGAGGCCAGCAACAGCGCGCAGAAGGTAGCGGGCTCCACTGAGAAAGTCGCCAGCGCCCAGGCGCCACGCGGTTAAGGGATCACACCG
DNA Sequence for Gene
>PPL01S_RS19540
ATGAACTTTTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCCGTACTGTCACTGGTGCTGCTGATCGCAGGCTCGATCTCGCTGTTCCAGCTGCCGA TCAGTGAATACCCGGAAGTCGTGCCGCCCACCGTGGTGGTGCGCGCCAACTTCCCCGGGGCCAACCCCAAGGTCATCGGCGAAACCGTCGCCGCACCGCT GGAGCAAGCCATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAGTCTACCGCCGACGGCAAGCTGACCCTGACCATCACCTTCGCCCTGGGCACC GACCTTGACAACGCGCAGGTGCAGGTGCAGAACCGCGTCACCCGGACCCAGCCCAAGCTTCCGGAAGAAGTGACACGCATCGGTATCACCGTCGACAAGG CCTCGCCCGACCTGACCATGGTCGTGCACCTGACCTCGCCGGACAACCGCTACGACATGCTCTACCTGTCCAACTACGCCATCCTCAACATCAAGGATGA ACTGGCACGCCTGGGCGGCGTCGGTGACGTGCAACTGTTCGGCATGGGCGACTATTCGCTGCGCGTATGGCTCGACCCGAACAAGACCGCTTCGCGCAAC CTGACCGCCAGTGACGTGGTCGCCGCCATCCGCGAGCAGAACCGCCAGGTCGCTGCCGGCCAGCTGGGCGCCCCGCCCGCCCCCGGTTCGACCAGTTTCC AGCTGTCGATCAACACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAGAACATCATCATTCGCGCAGGTGCCGACGGTGAGATCACGCGCCTGAAGGA CATCGCCCGGGTCGAGCTGGGCTCCAGCCAATACGCCCTGCGTTCGTTGCTCAACAACCAGCCGGCCGTGGCCATCCCGATCTTCCAGCGCCCAGGCTCC AACGCCATCGAGATCTCCGACGAAGTGCGGGCGAAGATGGCCGAGCTGAAGAAAGACTTCCCCGAAGGCATGGACTACAGCATCGTCTACGACCCGACCA TCTTCGTACGTGGCTCCATCGAAGCGGTGGTGCACACTCTGTTCGAGGCGCTGGTGCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGTGC CTCGATCATCCCGCTGCTGGCCGTGCCGGTGTCGCTGATCGGTACCTTTGCGGTGATGCACCTGTTCGGCTTCTCGCTCAACGCCTTGTCGTTGTTCGGG CTGGTACTGGCCATCGGTATCGTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTAATATCGGGCTGGGGCTGAAACCGCTGGAGGCCACGC AAAAGGCCATGAGCGAGGTGACCGGGCCGATCATCGCCACGGCGTTGGTGCTGTGCGCCGTGTTCGTGCCGGCCGCGTTCATCTCCGGCCTTACCGGGCA GTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTGATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCCTGGCCGCGGTGCTGCTCAAG GACCACCATGCGCCCAAGGACCGTTTCTCGCGGTTCCTGGAAAAACTGCTGGGCAGCTGGCTGTTCGCTCCGTTCAACCGTTTCTTCGAACGTGCCAGCC ACGGTTATGTCGGCGGCGTGCGCCGGGTCATCCGCTCCAGCGGCATCGCCCTGTTCGTCTATGCCGGCCTCATGGGCCTGACCTACCTGGGTTTCTCGTC CACCCCGACCGGTTTCGTGCCGGCCCAGGACAAGCAGTACCTGGTGGCCTTTGCCCAACTGCCTGACGCTGCCAGCCTCGACCGCACCGAGGCAGTGATC AAGCGCATGAGCGAAATCGCCCTGAAGCAGCCTGGCGTCGCCGACTCGGTAGCTTTCCCTGGCCTGTCGATCAACGGCTTCACCAACAGCCCGAACAGCG GCATCGTGTTCACCCCGCTCAAGCCGTTCGACGAACGCAAGGACCCGAGCCAGTCGGCCGCGGCCATCGCCGCTGCGCTGAATGCCCAGTTCGCCGACAT CCAGGACGCCTATATCGCGATCTTCCCACCGCCGCCGGTACAGGGCCTGGGCACCATCGGCGGGTTCCGCCTGCAGATCGAAGACCGCGGCAACCTGGGC TATGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCAGAATGTGCCGGAACTGGCGGGCCTGTTCACCAGCTACCAGGTCAACGTGCCCC AGGTCGATGCTGCCATCGACCGGGAAAAGGCCAAGACCCACGGCGTGGCCATTACCGATATCTTCGACACCCTGCAGGTGTACCTGGGTTCTCTGTACAC CAACGACTTCAACCGTTTTGGCCGCACCTACCAGGTCAACGTCCAGGCCGAGCAGCAGTTCCGCCTCGATGCCGAGCAGATCGGCCAGCTGAAGGTGCGC AACAACCTTGGCGAGATGATCCCGCTGGCGACTTTCCTCAAGGTCAGCGACACCTCCGGGCCCGACCGGGTGATGCACTACAACGGCTTCATCACCGCAG AGATCAATGGCGCGGCGGCACCGGGCTACAGCTCCGGCCAGGCCGAAGCTGCGATCGAGAAGCTGCTCAAGCAGGAGCTGCCCAACGGCATGACGTTCGA ATGGACCGACCTGACCTACCAGCAGATCCTGTCCGGCAATACCGCGTTGCTGGTGTTCCCGCTCTGCGTGCTGCTGGCGTTCCTGGTGCTGGCGGCCCAA TACGAGAGCTGGAGCCTGCCGCTGGCAGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATCACCGGGGTGATCGTCTCGGGTGGCGACAACAACA TCTTCACCCAGATCGGCTTGATCGTGCTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAAGGACGAACAGGCCAAGGGACTGGA CCCGCTGGCTGCGGTACTGGAAGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACCTCGATCGCCTTCATCATGGGTGTGGTACCGCTGGTGTTTTCC TCCGGCGCGGGCTCTGAAATGCGTCACGCCATGGGCGTCGCGGTGTTCTCCGGGATGATCGGCGTGACCGTGTTCGGGCTGTTCCTGACCCCGGTGTTCT TCTTCCTGATCCGCCGTTTCGTCGAGCGTCGCCAAGCCCGCAAGGCCGAACGCGCTCACTCGCTGGAGAGCCACGCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCTGCTCAAGCCCCTGACCCCGAGCTTGCTGGCCCTGGCCCTGGCGGCCTGCGCCGTGGGCCCGGACTACAAGACGCCGGACACGGAACCTGCAAGTGT CGACACCCCGCTGCAGGCCAAGTCCTTTGACCGCAGCCGCTTCGAGAGCGTGTGGTGGAAGCAGTTCGACGACCCGGTGCTCAACCAGCTGGTACAGGCA TCGCTGGACGGCAACCGCGACCTGCGGGTGGCATTCGCCCGGCTCAAGTCGGCACGGGCAATCCGCGATGACGCCGCCAATGACCAGCTGCCGGTGGTTA CCAGCCGCGTCAGCAGCGAGATCGGCAAGGGTCAGATTCCCGGCCAGACCGATCAGCGGGTCAACAGCGAGCGCTATGACCTGGGCCTGGACATGGCCTG GGAACTTGACCTGTTCGGCCGCATCCAGCGCCAGATCGAAGCCAGCGAGGCCCAGGCAGCAGCTGCCCAGGCCGACCTGCAACAGCTGCAGGTCAGCCTG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK DHHAPKDRFSRFLEKLLGSWLFAPFNRFFERASHGYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLG YEALYKETQNIIAKSQNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQIGQLKVR NNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEAAIEKLLKQELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFS SGAGSEMRHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQARKAERAHSLESHA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site