Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS20455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 strain NBRC 103162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCCTGCTTTTCATGATCGGCATTCGAAGGATGCGCGATTGTCGCAGATTTGCCGGTTGTTTGCTGTCTGTGCCGGCCCTGTCGCCAGCAAGCTGGCTC CCACAGGAACGTCACCGGATGCAAAAACATGTAGGAGCCGGCTTGCCGGCGATGAGGCCAGAGGCAACATCGGGAATGTTTAGCCAAGTGCGATATGAAG GTTGCCATTCACTGCTTTAATCAACATTACGCCCCGTGTGAGTATCGAAGGCATGATTCCCGCCCCGACCATCGCCCCGCCGCTGTCCCGCCCTTCGCTG CCGAAGGCTCGGACCCGCGCCGGTGAAAATCCGCTGGTCCATGTCATTCTCGCCTTCTGGGCCCTGTGGCACTGCCGTCACGCGCGCCCACCGGACACCT CGCTCACGCCAGTCTGACCAGACCCGGCCTCCATCTGGCCGATTGACTCAGCCGGACCGCAACCAAGCGGCGGTCCTGTGTGCCCACGAGCGTATCCATC
|
|
| DNA Sequence for Gene |
>PPL01S_RS20455
ATGCACTTTGCATCCGTAGAGCAAGCCAGCCGTTTCCTCGCCGACAACCCCGATATCGAACTGTTCGAACTGTTCATCCTCGACGCCAACGGCGTACCCC GCGGCAAGTTGCTGCACCGCGAGGAACTGCTGGCGGTGTACCAGAGCGGTCGCCCGCTGCCCAGCACCATCCTGGGCCTGACCCTCAATGGCGATGACGT GGAGAACTCCGGCCTGGTCTGGGACGTCGGCGACATCGACTGCCGCGCCTATCCCCTGGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGTGTACCGACC GCCGCCGTGCAAGTCAGCATGCACCCCAGCGAAGGCCTGCCGGCCAGCGTCGCCGACCCGCGCCACGTGCTGCTGCGCACCGTCGAAGCCCTGAAGGCCG ACGGCTACCATCCGGTGATGGCCTGTGAGCTGGAATTCTACCTGCTCGACCAGAAGCGCGATGCCCAAGGCCGCCCGCAACCGGCCCTGGACAATGACGG CGGCCGTCCGCGCAGCACCCAGGTCTATGGCCTGCGCGAACTGGAGCAGATCGAACCGTTCCTCGCCGACCTCTACGCCGCCTGCAAGGCCCAGGGCATC CCGGCCCGCACGGCGATCTCCGAGTACGCCCCGGGCCAGGTGGAAATCACCCTGGAACATGGCGATGCGCTGGAGGCCATGGACCAGGCCGTGCGCTACA AGCGCCTGGTCAAAGGCGTGGCCCATGCCCATGGCATGCAGGCCTGTTTCATGGCCAAGCCCTTCGCGCAGCTGGCCGGTACCGGCATGCACATGCACCT GAGCTTGGCCGACAGCGCCGGCAACAACCTGTTCGCCAGCGAAGACAAGGCCGGCACCCCGCTGCTGCGCCAGGCAGTGGCCGGCATGTTGCGCCACCTG CGCGACTCGCTGCTGCTGTTCTGCCCCAACGCCAACTCGTTCCGCCGTTTCCAGGCCAACAGCTACGCGCCGCTGGCCCCGACCTGGGGCGTCGACAACC GCACGGTCAGCCTTCGCGTGCCTGGCGGGCCGGCCAACAGCCGCCATGTGGAGCACCGTATCTGCGGTGCCGATGCCAACCCGTACCTGGCTGCGGCGGC AATCCTCGCCGCCAGCCACCGCGGCATCCGCGAACAGCTCGACCCGGGCGCACCGGTGCAAGGCAATGGCTACGCCCAGGCCACCGAACATCTGCCCACC GATTGGCTGACTGCCCTGGACGCGCTGGAGCGCTCGGAATGGGCCAGGGAAGCGCTCGGCCAGGACTTCCTCGGGGTGTACCTGAAGGTCAAGCGCGCCG AGTACCGCCAGTTCATGGCCGAAGTCAGCGAACAGGACTGGCGCTGGTACCTGCACCAGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCTACCCTATCTAACAAGGAATACCCATGAACGCAGCATTCAACAACGGCCCGGCCCAGCGCGCGCCGTCCTATTACAGCGCCTCGCTCAACGACACT ACCGAATACTCACAGCTCAAGGGCACCGTGCAGGTCGACGTGGCCATCATCGGCGGCGGCTTCACCGGCGTGGCCACTGCCGTGGAGCTGGCCGAGCGTG GCCTCAAGGTGGCGATAGTCGAAACCAACCGCATCGGCTGGGGGGCCAGCGGGCGCAATGGCGGGCAGGTCACCGGCAGCCTGTCGGGTGATGAGGCCAT GCGCACCCAGATGCGCCAGCGCTTGGGAAGCGAGGTCGACGACTTCATCTGGCACCTGCGCTGGCGCGGGCACCAGATCATCGAGCAGCGGGTCGAGCGC TATGGCATCGATTGCGACCTCAAGCGCGGCCACCTGCACGCCGCGATGAAGCCCTCGCACATGAATGAGCTGCGCAGCTTCGAGGCCGAGGCGCAGCGAC
|
|
| Amino Acid Sequence |
>glutamate--putrescine ligase
MHFASVEQASRFLADNPDIELFELFILDANGVPRGKLLHREELLAVYQSGRPLPSTILGLTLNGDDVENSGLVWDVGDIDCRAYPLDGSLVRLPWRRVPT AAVQVSMHPSEGLPASVADPRHVLLRTVEALKADGYHPVMACELEFYLLDQKRDAQGRPQPALDNDGGRPRSTQVYGLRELEQIEPFLADLYAACKAQGI PARTAISEYAPGQVEITLEHGDALEAMDQAVRYKRLVKGVAHAHGMQACFMAKPFAQLAGTGMHMHLSLADSAGNNLFASEDKAGTPLLRQAVAGMLRHL RDSLLLFCPNANSFRRFQANSYAPLAPTWGVDNRTVSLRVPGGPANSRHVEHRICGADANPYLAAAAILAASHRGIREQLDPGAPVQGNGYAQATEHLPT DWLTALDALERSEWAREALGQDFLGVYLKVKRAEYRQFMAEVSEQDWRWYLHQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|