Pseudomonas parafulva CRS01-1, NJ69_RS20905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006935 | chemotaxis |
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppv02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppv02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50341 | CheW-like | IPR036061 | CheW-like domain superfamily | 35 | 164 | 1.83E-30 |
| SMART | SM00260 | chew_2 | IPR002545 | CheW-like domain | 37 | 174 | 2.4E-21 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | - | - | 44 | 162 | 1.7E-22 |
| Gene3D | G3DSA:2.40.50.180 | - | - | - | 60 | 126 | 1.7E-22 |
| PANTHER | PTHR22617 | CHEMOTAXIS SENSOR HISTIDINE KINASE-RELATED | IPR039315 | Chemotaxis protein CheW | 36 | 159 | 1.8E-21 |
| Pfam | PF01584 | CheW-like domain | IPR002545 | CheW-like domain | 43 | 157 | 1.5E-26 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.