Pseudomonas parafulva CRS01-1, NJ69_RS17790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCTGGCCGCCGATGGCGACCGCGATGCCGTGTTCAACGTCTATGAATCACTGCTGGTGGCGCCGTCCAGCGACGAAAGCATGACGGTGCGCTTGCTGG ACAACCCCAAAATCGAAGCCCAGGGGCGCATCCGCGAAGTCACGCCCACGGTGTCCGCCCAGAGCGGCACGGTGCAGGTCAAGGTCGCCCTGCGCGAGGT GCCGCCGGCCATGCAGCTCGGCTCGCCGGTCACCGCCACTGCCCGTGCCCAGGCCCGGCCCAGCGTCGAGCTGCCCTGGTCGAGCCTGACCAAGGCCCTG CACGCGCCAGCGGTGTGGGTGGTCGGTGACGACGACAAGGTCGAGTTGCGCAAGGTTCAGGTGGCGCGTTATCTCACCGGGCGCGTGGTGATCGGCGAAG GCCTGAAAGGCGGCGAAGCCGTGGTGGTCAGCGGCGGGCAACTGCTGCATCCCGGCATGCAGGTCGAGACCGTCGATGCCAAGGCCCCGGAGGTACAGCC
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| DNA Sequence for Gene |
>NJ69_RS17790
ATGAAGGTGCTGCTGATGCTGCTGGGCGCCCTGGTGCTGTTGGGCGGCTGCAAGGGCGACGACGACAAGCCCGAGCCGGTGCGGCCGGTGCTGTCCACCG TGGTGCAGCCTTTGTCCCAGGCGCAGTTGGGCCGCTTCGCCGGTAACATCGAGGCGCGTTATGAAAGCACGCTGGGCTTTCGCGTGTCCGGTCGCATCGC CCGGCGCTGGGTGGATGTCGGCGCGCAGGTCGAGGCAGGCCAGACCCTCGCCACCCTCGACCCAACCGATCAACAGAACCAACTGCGCGCTGCCGAGGGC GACCTGGCCAGGGTCCAGGCACAGTGGATCAATGCCCAGGCCAACGCCCGCCGCCAGCAGCAACTGTATGACCGTGGCGTCGGCGCCCAGGCTCAACTGG ACATCGCCCAGACCGACCTGAAGACCAGCAGCGCCTCGCTGGAGCAGGCGCGCGCGTCGGTCAGCCAGGCCCGTGACCAGTTGGGCTACAGCACGCTCAA GGCCGATCATGCCGCTGTGGTCACCGCTTGGCGCGCCGAGGCTGGGCAAACGGTGAGTGCCGGCCAGGAAGTGGTCACGCTGGCGCGCCCCGACGTCAAG GAGGCGGTGATCGACCTGCCGATCCCGGTTGCCGAGCAGCTCAGTCCATCGCTGGTGTTCACCGTCGCCTCGCAACTGGACCCGAGCATCGCCACCACCG CCACCCTGCGCGAGCTCGAGCCCCAGGCCGATGCCGCCACCCGTACCCGCCGCGCGCGGCTGACCCTGGCCAGCACGCCGCCGGCCTTCCACCTGGGCAC TGCGGTGAGTGTCACCCTCAGCTCGGCCATTAGCCCACGCAGCGAGCTGCCGGCCACCGCGCTGATCGAGCGCGAGGGCAAGACCCTGGTGTGGGTGGTC GATCCGCAACAGCACAGCGTAGCGACCCGCGAGGTCACGCTCATCGACCGCGACGCCAAGCGCATCGTGGTCGCCAGCGGCTTGCAGCCGGGCGAGCGCG TGGTCACTGCGGGCGTCAACAGCCTCAAACCGGGCCAGCCGGTCAAAGTCGACGAGGACGCACGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGACGCTTCAACCTGTCGGACTGGGCGCTCAAGCACCAGTCCTTCGTGTGGTACCTGATGTTCGTCGCCTTGCTGATGGGCGTGTTCTCCTACATGAA CCTGGGACGCGAAGAAGATCCGTCCTTCACCATCAAGACCATGGTCATCCAGACCCGCTGGCCGGGCGCGACCCAGGACGAAACCCTGTACCAGGTCACC GATCGCATCGAGAAAAAGCTCGAAGAGCTGGATTCACTCGACTACGTCAAGAGCTACACCCGCCCCGGCGAGTCGACCGTGTTCGTGTACCTGCGCGACA CCACCCAGGCCGAGGACATTCCGCAGATCTGGTACCAGGTGCGCAAGAAGATCCAGGACATCCGTGGCGAGTTTCCGCAAGGCTTGCAGGGCCCGGCCTT CAACGACGAGTTCGGCGACGTGTTCGGGTCGATCTACGCCTTCACCACAGACGGCCTGGACCTGCGCCAGTTGCGCGACTATGTCGAGCAGGTGCGCGCC
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| Amino Acid Sequence |
>RND transporter
MKVLLMLLGALVLLGGCKGDDDKPEPVRPVLSTVVQPLSQAQLGRFAGNIEARYESTLGFRVSGRIARRWVDVGAQVEAGQTLATLDPTDQQNQLRAAEG DLARVQAQWINAQANARRQQQLYDRGVGAQAQLDIAQTDLKTSSASLEQARASVSQARDQLGYSTLKADHAAVVTAWRAEAGQTVSAGQEVVTLARPDVK EAVIDLPIPVAEQLSPSLVFTVASQLDPSIATTATLRELEPQADAATRTRRARLTLASTPPAFHLGTAVSVTLSSAISPRSELPATALIEREGKTLVWVV DPQQHSVATREVTLIDRDAKRIVVASGLQPGERVVTAGVNSLKPGQPVKVDEDAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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