Pseudomonas parafulva CRS01-1, NJ69_RS17105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TATGCGAGCTGGAAGGCCCGACACCGATCTTGAACAGGTCGAACACGCTGATGGCCATTGTCGAATCACCTCTTGATGGGCTTGTTCCTGCGCGCCAGGT GGCGGCGCAGCCAGCTGCTAGGCTGAGGGCGGCGGGTGCCGCGAATGCACGCATGATCGGGGTTTTAACCCAGCCTTCGCCGTCTGCAACCGACCTGATT TTGTCCGGCAGCGCCCTGTAGGGATGGCCACTGTCTGGCCGCTTTCAGGCGAGCCAATGACGCAATTGCACGGCCTCGGGGAGGGAAAAATCCGTAAACG ACATTGCCCGTACTGGATGCGACCTGTCCTGCACTGGTTACGACTCCACCAGTAGGCGATTGCCGAACGCTGGTGGATTATCGAAAGCGACTCGTATTGC ACGGCCTCGCAACCTGCCCTCTGCAGGCCCGGACGATCAGCCCCCGAGAAAGGACTGGCGTACTGCGCGAACCCGAAGAAAAAATCACAGGAGTCCACCC
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| DNA Sequence for Gene |
>NJ69_RS17105
ATGAACGCTTCGCCCTCGCTGTTACTGGCCGCGTTGCTCGCAGCCCCGGTGCTGGCCCAGGCCGCCGAACCCGAGCAATGTCAGACGGTTCGCTTTTCCG ACGTCGGCTGGACCGACATCACCGTGACCACCGCCACCACCAGCGCCGTCCTCGAGGCGCTGGGCTACAAGACCCACACCACCATGATCTCGGTACCGGT GACCTACAAGTCGCTGGCCAACGGCAGAGACCTGGACGTGTTTCTCGGCAACTGGATGCCGACCATGGAAAACGACATCAAGGCGTACCGCGACGCCGGT ACCGTCGAGACCGTGCGCGCCAACCTGGAGAACGCCAAGTACACCCTGGCCGTGCCGCAGTACCTGTACGACAAGGGCCTGAAGGATTTCAGCGACATCG CCAAGTTCAAGCAGGAACTGGGCGGCAAGATCTACGGCATCGAGCCGGGTAACGATGGCAACCGCACCATCCAGAAGATGATCGACGACAACGCCTTCGG CCTGAAGGACGCCGGTTTCAAGATCGTCCAGTCCAGCGAAGCGGGCATGCTCAGCCAGGTCGACAAGGACCAGCGCAAGAACGAGGCCATCGTCTTCCTC GGCTGGGAACCCCACCCGATGAATACCCGCTTCAAGATGCAGTACCTGACCGGCGGCGATGCCTACTTCGGTCCCGACTTCGGCAAGGCCACCGTCTACA CCAACACCCGCAAGGGCTACACCGAGCAGTGCAGCAACGTCGGCCAGTTGCTGAAGAACCTGGTGTTCGATCTCAAGGACGAGAGCACCATGATGGGCTA TGTCCTGGACGACAAGATGAAACCCGACGCCGCCGCCAAGCGCTTCATCAAGGACAACCCTGGCAAGCTGGATGCCTGGCTCGCGGGCGTGACCACCGTG GATGGCAAACCGGGCCTGGAGGCGGCCAAGGCCAAGCTCACGCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAATGAAATACGCAGTAGCAGTAATGGTCGCCAACGGCCATTAGGCACTACCTCGGGACGCCACCGTGACGTCCCGGACTGATTTCAATCTTTGCAGGTG GAAGCTCGCTATCATGCTTATCGATCAGAAAATACCTTTGGGGCAGTACATGGCCTCATTCGTCGAGTGGTTGACCCAACATGGCGCCAACTACTTCGAT GCCATCGCCCAAGGGCTGGAGTTCATGATCCACGGCGTCACCAGTACGCTGACCTGGTTCAATCCACTCGTGCTCATCGCCATTTTCGCCGCCCTGGCGC ACCTGATTCAGCGCAAAGTGGCGCTGACCGTGTTCGTCGCGGTGTCGTTCCTGCTGATCCTCAACCTGGGCTACTGGCAGGAAACCATGGAGACCCTCGC CCAGGTCAGTTTCGCCACGGTGGTCTGCGTGGCCATCGGTGTGCCGCTGGGCATCGTCGCCGCGCACAAGCCGATGTTCTACACCGCCATGCGTCCGGTG
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| Amino Acid Sequence |
>glycine/betaine ABC transporter substrate-binding protein
MNASPSLLLAALLAAPVLAQAAEPEQCQTVRFSDVGWTDITVTTATTSAVLEALGYKTHTTMISVPVTYKSLANGRDLDVFLGNWMPTMENDIKAYRDAG TVETVRANLENAKYTLAVPQYLYDKGLKDFSDIAKFKQELGGKIYGIEPGNDGNRTIQKMIDDNAFGLKDAGFKIVQSSEAGMLSQVDKDQRKNEAIVFL GWEPHPMNTRFKMQYLTGGDAYFGPDFGKATVYTNTRKGYTEQCSNVGQLLKNLVFDLKDESTMMGYVLDDKMKPDAAAKRFIKDNPGKLDAWLAGVTTV DGKPGLEAAKAKLTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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