Pseudomonas parafulva CRS01-1, NJ69_RS16675

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00974	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00400	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00974	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00974	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00400	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppv03030	DNA replication	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	647	30.213531
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	468	519	-
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	110	242	1.8E-49
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	1.1E-41
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	522	648	1.83E-30
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	420	0.0
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	261	328	4.7E-17
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	486	507	-
SUPERFAMILY	SSF56731	DNA primase core	-	-	116	427	3.66E-110
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	653	0.0
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	261	332	1.0E-20
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	101	1.29E-36
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	126	254	1.6E-43
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	94	108	-
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	8.9E-34
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	525	645	3.8E-26
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	7.2E-41
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	510	654	9.5E-34
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	243	370	6.6E-55
Gene3D	G3DSA:3.40.1360.10	-	-	-	243	370	3.3E-42
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	642	0.0
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	113	242	5.6E-49
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	373	425	8.0E-10
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	371	426	6.9E-21
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	521	646	2.1E-35
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	101	1.5E-35
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	94	114	-
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	261	342	1.10492E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.